View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16952_low_6 (Length: 403)
Name: NF16952_low_6
Description: NF16952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16952_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 47366475 - 47366081
Alignment:
| Q |
1 |
atcagtgaacattatctgtgctgcaacataaaagattttaaggtcgcataagcagaagatttccacaatatcaaggtttgtgatgcatctgtaacctcaa |
100 |
Q |
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| T |
47366475 |
atcagtgatcattatctgtgctgcaacataaaagattttaaggtcgcataagcagaagatttccacaatatcaaggtttgtgatgcatctgtaacctcaa |
47366376 |
T |
|
| Q |
101 |
cttaaaacacccgatccaagggatgacaggtaggtaatatatagttgataaacttcagtcagttttggcaaatagcggctatagaggtggtgctatagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47366375 |
cttaaaacacccgatccaagggatgacaggtaggtaatatatagttgataaacttcagtcagttttggcaaatagcggctatagaggtggtgctatagca |
47366276 |
T |
|
| Q |
201 |
ctatagcatagtgaatttgaactaatcgtcaaataaatgctattgcagcgccacagcgtaatgaaattctaacaaaccactaatttccgagatttgcgat |
300 |
Q |
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| T |
47366275 |
ctatagcatagtgaatttgaactaatcgtcaaataaatgctattgcagcgccacagcgtaatgaaattctaacaaaccactaatttccgagatttgcgat |
47366176 |
T |
|
| Q |
301 |
taacaacactaactgcagtgaaactttgt--ttttgctatgtgttgaagagtaaaaactaatgatctaatgaaagttgttaggcccacccctatg |
393 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47366175 |
taacaacactaactgcagtgaaactttgtttttttgctatgtattgaaaagtaaaaactaatgatctaatgaaagttgttaggcccacccttatg |
47366081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 9446327 - 9446359
Alignment:
| Q |
170 |
aaatagcggctatagaggtggtgctatagcact |
202 |
Q |
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| T |
9446327 |
aaatagcggctatagtggtggtgctatagcact |
9446359 |
T |
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