View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16953_high_2 (Length: 467)

Name: NF16953_high_2
Description: NF16953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16953_high_2
NF16953_high_2
[»] chr2 (3 HSPs)
chr2 (18-425)||(6489232-6489636)
chr2 (76-421)||(6479921-6480265)
chr2 (426-467)||(6489658-6489699)
[»] chr4 (1 HSPs)
chr4 (18-362)||(51946714-51947058)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 6489232 - 6489636
Alignment:
Q  18 atttcaggacgaacgaggcgtgtaggatttggaaaacaaggcattctccgcctatgtagagttgaacggacagcagctgggg-ggacacactgctgcggt 116  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| |||||||| | ||||||    
T  6489232 atttcgggacgaacgaggcatgtaggatttggaaaacaaggcattcttcggctatgtagagttgaacggacatcagctgggggggacacaccgatgcggt 6489331  T
Q  117 tgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtttatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6489332 tgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtctatt 6489431  T
Q  217 tgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgttagggagaacataatcgattgtgctgatggacatcgtg 316  Q
    |||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||| ||||| |||||||| ||||||||| ||||    
T  6489432 tgtgatcattgtgtgaatgatgtctgagtgaaagaagacatcgtac---ttgtgagttttgttagggagagcataaccgattgtggtgatggacaacgtg 6489528  T
Q  317 gattttcaaagaatattagtgaattcttaaaagctaagtgatgtatnnnnnnnnntaggctagtcaaatatatagaaggtgaattcattcataaaggctg 416  Q
    |||||||||||||||||| ||||||||| ||||| |||||||||||         ||||||||||||||||||| |||||||||||||||||||||||||    
T  6489529 gattttcaaagaatattattgaattcttgaaagc-aagtgatgtataaaaaaaaataggctagtcaaatatataaaaggtgaattcattcataaaggctg 6489627  T
Q  417 ccgatacat 425  Q
    |||||||||    
T  6489628 ccgatacat 6489636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 76 - 421
Target Start/End: Complemental strand, 6480265 - 6479921
Alignment:
Q  76 gagttgaacggacagcagctg-gggggacacactgctgcggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtaggg 174  Q
    ||||||||||||||||| ||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6480265 gagttgaacggacagcaactgcgggggacacaccactgcggttgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtaggg 6480166  T
Q  175 tttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtgagtt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  6480165 tttgatgcttgagagccatttgtccaccatgaaaggtttatttgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtggttt 6480066  T
Q  275 ttgttagggagaacataatcgattgtgctgatggacatcgtggattttcaaagaatattagtgaattcttaaaagctaagtgatgtatnnnnnnnnntag 374  Q
    |||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||         |||    
T  6480065 ttgttagggagagcgtaatcgattgtggtgatggacattgtggattttcaaagaatattattgaattcttgaaagctaagtgatgtat--aaaaaaatag 6479968  T
Q  375 gctagtcaaatatatagaaggtgaattcattcataaaggctgccgat 421  Q
    | |||| ||||||||||||| ||||||||||||||||||||||||||    
T  6479967 ggtagttaaatatatagaagatgaattcattcataaaggctgccgat 6479921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 467
Target Start/End: Original strand, 6489658 - 6489699
Alignment:
Q  426 aaacagaaccatgaccaaatatataacctttccactaaccct 467  Q
    ||| ||||||||||||||||||||||||||||||||||||||    
T  6489658 aaagagaaccatgaccaaatatataacctttccactaaccct 6489699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 51947058 - 51946714
Alignment:
Q  18 atttcaggacgaacgaggcgtgtaggatttggaaaacaaggcattctccgcctatgtagagttgaacggacagcagctggggg-gacacactgctgcggt 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||    | |||    
T  51947058 atttcgggacgaacgaggcgtgtaggatttggaaaacaaggcattctccgcctatgtatagttgaa-ggacagcagctgggggagacacaccagagtggt 51946960  T
Q  117 tgatgaagagacactcaacatccaagccgacaaggaatctattgttgttttcgtagggtttgatgcttgagagccatttgtccaccatgaaaggtttatt 216  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51946959 tgatgaagagacactcaacatctaagccgacaaggaagctattgttgttttcgtatggtttgatgcttgagagccatttgtccaccatgaaaggtttatt 51946860  T
Q  217 tgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtacttgttgtgagttttgttagggagaacataatcgattgtgctgatggacatcgtg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | | |||||||||||| ||||||||||||||    
T  51946859 tgtgatcattgtgtgaatgatgtctgagtggaagaagacatcgtgcttgttgtgagttttattagggacagcgtaatcgattgtggtgatggacatcgtg 51946760  T
Q  317 gattttcaaagaatattagtgaattcttaaaagctaagtgatgtat 362  Q
    ||||||||| |||||||| ||||||||| | |||||||||||||||    
T  51946759 gattttcaatgaatattattgaattcttgagagctaagtgatgtat 51946714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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