View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16953_high_6 (Length: 312)
Name: NF16953_high_6
Description: NF16953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16953_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 7456902 - 7457176
Alignment:
| Q |
18 |
ataccagaatcatgagatatccaaagcttatgcttctagaacctgttttgcagacgtaaacaattagtaggaaaagtgctcttttgttttcgtgtcagtt |
117 |
Q |
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| T |
7456902 |
ataccagaatcatgagatatccaaagcttatgcttctagaacctgttttgcagacttaaacaattagtaggcaaagtgctcttttgtttttgtgtcagtt |
7457001 |
T |
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| Q |
118 |
tgtcatcgtcaaaacatcaataacgtatagtttgtatatgtaccgatttctaacaattgtgtgtgtcgtaaatgttaattacaattagtatttataggca |
217 |
Q |
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| T |
7457002 |
tgtcatcgtcaaaacatcaataacgtatagtttgtatatgtacctatttctaacaattgtgtgtgtcgtaaatgttaattacaattagtatttataggca |
7457101 |
T |
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| Q |
218 |
gagctcgcatcttgctagttaagacattatggtctacaaaatcttgcttgatcgccgtattcggctattcccaca |
292 |
Q |
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| T |
7457102 |
gagctcgcatcttgctggttaagacattatggtctacaaaatcttgcttgattgccgtattcggctattcccaca |
7457176 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 13219802 - 13219749
Alignment:
| Q |
177 |
tgtgtgtcgtaaatgttaattacaattagtatttataggcagagctcgcatctt |
230 |
Q |
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| T |
13219802 |
tgtgtgtccaaaatgttaagtacaatgagtatttataggtagaactcgcatctt |
13219749 |
T |
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