View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16953_low_11 (Length: 237)
Name: NF16953_low_11
Description: NF16953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16953_low_11 |
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| [»] scaffold0051 (1 HSPs) |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17532690 - 17532469
Alignment:
| Q |
1 |
aagtttactttctcggttcatgaatgatccaagccatatccatctaggagccgcaaaaagggtgttgagatatattcaaggcactttggaccatggaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17532690 |
aagtttactttctcggttcatgaatgatccaagccatatccatctaggagccgcaaaaagggtgttgagatatattcaaggcactttggactatggaatc |
17532591 |
T |
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| Q |
101 |
aaatatgacagcaaggttgaaagtaagttaattggcttttgcgatagtgactgggcaggttgtatggatgacatgaaaagcacctctggatatgttttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17532590 |
aaatatgacagcaaggttgaaagtaagttaattggcttttgcgataatgactgggcaggttgtatggatgacatgaaaagcacctctggatatgttttct |
17532491 |
T |
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| Q |
201 |
cattaggttcaggagcagtttc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
17532490 |
cattaggttcaggagcagtttc |
17532469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35173 - 34953
Alignment:
| Q |
1 |
aagtttactttctcggttcatgaatgatccaagccatatccatctaggagccgcaaaaagggtgttgagatatattcaaggcactttggaccatggaatc |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35173 |
aagtttacttta-cggttcatgaatgatccaagccatatccatctaggagctgcaaaaagggtgttgagatatattcaaggcactttggactatggaatc |
35075 |
T |
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| Q |
101 |
aaatatgacagcaaggttgaaagtaagttaattggcttttgcgatagtgactgggcaggttgtatggatgacatgaaaagcacctctggatatgttttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35074 |
aaatatgacagcaaggttgaaagtaagttaattggcttttgcgacagtgactgggcaggttgtatggatgacatgaaaagcaactctggatatgttttct |
34975 |
T |
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| Q |
201 |
cattaggttcaggagcagtttc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
34974 |
cattaggttcaggagcagtttc |
34953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 14499 - 14432
Alignment:
| Q |
1 |
aagtttactttctcggttcatgaatgatccaagccatatccatctaggagccgcaaaaagggtgttga |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14499 |
aagtttactttctcggttcatgaatgatccaagccatatccatctaggagcaacaaaaagggtgttga |
14432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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