View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16953_low_12 (Length: 232)
Name: NF16953_low_12
Description: NF16953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16953_low_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 3881436 - 3881210
Alignment:
| Q |
6 |
aggagcagagtccatctaacccaatcgatgggcatgacattaatattaatgactcaattagtcgacaggcacgggttgttgcagacaagcaatcgtcatt |
105 |
Q |
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| T |
3881436 |
aggagcagggtccatctaacccaatcgatgggcatgacattaatattaatgactcaattagtcgacaggcacgggttgttgcagacaagcagtcatcatt |
3881337 |
T |
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| Q |
106 |
gagttgactataattcaaaacaacaaacatcagtccatactccatacgcaagcaagataaccaagaaactagcaaataaagcatcacctgcaaaaggaag |
205 |
Q |
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| T |
3881336 |
gagttgactataattcaaaacaacaaacatcagtccatactccatacgcaagcaggatagccaagaaactagcaaataaagcatcacctgcaaaaggaag |
3881237 |
T |
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| Q |
206 |
catccagagatgtcaagagaggacaat |
232 |
Q |
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| T |
3881236 |
catccagagatgtcaagagaggacaat |
3881210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 3867672 - 3867454
Alignment:
| Q |
11 |
cagagtccatctaacccaatcgatgggcatgacattaatattaatgactcaattagtcgacaggcacgggttgttgcagacaagcaatcgtcattgagtt |
110 |
Q |
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| T |
3867672 |
cagagtccatctaacccaatcgatgggcaggacattaatattaatgactcaatcagtggacaggcacgggttgttgcagacaagcagtcatcagtgagtt |
3867573 |
T |
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| Q |
111 |
gactataattcaaaacaacaaacatcagtccatactccatacgcaagcaagataaccaagaaactagcaaataaagcatcacctgcaaaaggaagcatcc |
210 |
Q |
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| T |
3867572 |
ggctgtaattcaaaacaaca---atcagtacatactccatacataagcaggataaccaagaaactagcagataaagcgtcacctgcaaaaggaagcatcc |
3867476 |
T |
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| Q |
211 |
agagatgtcaagagaggacaat |
232 |
Q |
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| T |
3867475 |
agtgatgtcaagagaggacaat |
3867454 |
T |
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