View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16953_low_2 (Length: 551)
Name: NF16953_low_2
Description: NF16953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16953_low_2 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0653 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 13 - 551
Target Start/End: Complemental strand, 28601031 - 28600487
Alignment:
| Q |
13 |
agtggataaaacagtaaataaaatggaggaaacaagtcttaccctaagcactgagatggagttgccagggtgagaaccatttgcaatatgagcaacttct |
112 |
Q |
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||||||||||| ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28601031 |
agtggataaaaaagtaaataaaatggaggaagcaaatcttaccctaagcacagagatggagttgccagggtgtgaaccatttgcaatatgagcaacttct |
28600932 |
T |
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| Q |
113 |
tgaacagcatttccattagaaagaacatcccactnnnnnnnnnnnnnnnnnnnnnnnttaattaaaaccaacatttcattctaaggttatagaatcaaat |
212 |
Q |
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|| ||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||| |
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| T |
28600931 |
tggacagcatttccattagatagaacatcccactaaacaaaaacaaagaaacaaaaattaataaaaacaaacatttcattctaaggtaatagaatcaaat |
28600832 |
T |
|
| Q |
213 |
attaattaaagtatatgacaaa------cctgtgatcttttcctttcatctttgaagaaattgaaaacagtttgtggagggagaggtagccaaatggtag |
306 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28600831 |
attaattaaagtatatgacaaagacaaacctgtgatcttttcctttcatctttgaagaaattgaaaacagtttgtggagggagaggtaaccaaatggtag |
28600732 |
T |
|
| Q |
307 |
tagctgcacatagcacaacaccactaggctgaccaagctcagtactcttcctaacagtaactctgactccagtctcattcaaagatgaaagtgtggtcca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28600731 |
tagctgcacatagcacaacaccactaggctgaccaagctcagtactcttcctaacagtaactctgactccagtctcattcaaagatgaaagtgtggtcca |
28600632 |
T |
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| Q |
407 |
tctatgactagctgatgcacttatgcttgcacagaaactagttaccatcttttgtgctagcttcatcatgctgctctttccctcaggtgatggaatcgct |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28600631 |
tctatgactagctgatgcacttatgcttgcacagaaactagttaccatcttttgtgctagcttcatcatgctgctctttccctcaggtgatggaatcgct |
28600532 |
T |
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| Q |
507 |
gaaaaattccgatatcaagccaagaaaattaaatatgatccaaat |
551 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
28600531 |
gaaaaattccaatatcaagccaagaaaattaaatatgatcgaaat |
28600487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 221 - 516
Target Start/End: Complemental strand, 2772 - 2501
Alignment:
| Q |
221 |
aagtatatgacaaacctgtgatcttttcctttcatctttgaagaaattgaaaacagtttgtggagggagaggtagccaaatggtagtagctgcacatagc |
320 |
Q |
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|||||| | ||||||||| |||| |||||||||||| || ||||||||||| ||||| |||||||| ||||| ||||||||| |||||| ||| | |||| |
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| T |
2772 |
aagtatttaacaaacctgagatcgtttcctttcatcgttcaagaaattgaacacagtctgtggaggaagaggcagccaaatgatagtagatgcgcttagc |
2673 |
T |
|
| Q |
321 |
acaacaccactaggctgaccaagctcagtactcttcctaacagtaactctgactccagtctcattcaaagatgaaagtgtggtccatctatgactagctg |
420 |
Q |
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|| ||||| ||||||||| ||||||| ||||||| |||||||||||| ||| | ||||||||||||||||||||||| |
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| T |
2672 |
accccaccattaggctgac------------tcttcctcacagtaa------------tctcattcaaagttgataatgtggtccatctatgactagctg |
2597 |
T |
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| Q |
421 |
atgcacttatgcttgcacagaaactagttaccatcttttgtgctagcttcatcatgctgctctttccctcaggtgatggaatcgctgaaaaattcc |
516 |
Q |
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|| || |||| ||| |||||||| ||||||||||| |||||| ||||||||||||| | |||||||| ||||||||||||||| |||||||||||| |
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| T |
2596 |
atccatttatactttcacagaaattagttaccatcctttgtgttagcttcatcatggtcctctttccatcaggtgatggaatcactgaaaaattcc |
2501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 3374 - 3267
Alignment:
| Q |
33 |
aaatggaggaaacaagtcttaccctaagcactgagatggagttgccagggtgagaaccatttgcaatatgagcaacttcttgaacagcatttccattaga |
132 |
Q |
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||||||||||| || |||||||| ||| ||| || ||| |||| |||||| | ||| ||||||| |||||| |||| ||||||||| |||| ||||| || |
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| T |
3374 |
aaatggaggaagcatgtcttaccttaaacacggaaatgcagttaccagggcgcgaaacatttgctatatgaacaacctcttgaacatcattaccattgga |
3275 |
T |
|
| Q |
133 |
aagaacat |
140 |
Q |
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||| |||| |
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| T |
3274 |
aagtacat |
3267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 221 - 516
Target Start/End: Complemental strand, 9277355 - 9277084
Alignment:
| Q |
221 |
aagtatatgacaaacctgtgatcttttcctttcatctttgaagaaattgaaaacagtttgtggagggagaggtagccaaatggtagtagctgcacatagc |
320 |
Q |
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|||||| | ||||||||| |||| |||||||||||| || ||||||||||| ||||| |||||||| ||||| ||||||||| |||||| ||| | |||| |
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| T |
9277355 |
aagtatttaacaaacctgagatcgtttcctttcatcgttcaagaaattgaacacagtctgtggaggaagaggcagccaaatgatagtagatgcgcttagc |
9277256 |
T |
|
| Q |
321 |
acaacaccactaggctgaccaagctcagtactcttcctaacagtaactctgactccagtctcattcaaagatgaaagtgtggtccatctatgactagctg |
420 |
Q |
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|| ||||| ||||||||| ||||||| ||||||| |||||||||||| ||| | ||||||||||||||||||||||| |
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| T |
9277255 |
acctcaccattaggctgac------------tcttcctcacagtaa------------tctcattcaaagttgataatgtggtccatctatgactagctg |
9277180 |
T |
|
| Q |
421 |
atgcacttatgcttgcacagaaactagttaccatcttttgtgctagcttcatcatgctgctctttccctcaggtgatggaatcgctgaaaaattcc |
516 |
Q |
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|| || |||| ||| |||||||| ||||||||||| |||||| ||||||||||||| | |||||||| ||||||||||||||| |||||||||||| |
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| T |
9277179 |
atccatttatactttcacagaaattagttaccatcctttgtgttagcttcatcatggtcctctttccatcaggtgatggaatcactgaaaaattcc |
9277084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 221 - 516
Target Start/End: Complemental strand, 9295007 - 9294736
Alignment:
| Q |
221 |
aagtatatgacaaacctgtgatcttttcctttcatctttgaagaaattgaaaacagtttgtggagggagaggtagccaaatggtagtagctgcacatagc |
320 |
Q |
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|||||| | ||||||||| |||| |||||||||||| || ||||||||||| ||||| |||||||| ||||| ||||||||| |||||| ||| | |||| |
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| T |
9295007 |
aagtatttaacaaacctgagatcgtttcctttcatcgttcaagaaattgaacacagtctgtggaggaagaggcagccaaatgatagtagatgcgcttagc |
9294908 |
T |
|
| Q |
321 |
acaacaccactaggctgaccaagctcagtactcttcctaacagtaactctgactccagtctcattcaaagatgaaagtgtggtccatctatgactagctg |
420 |
Q |
| |
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|| ||||| ||||||||| ||||||| ||||||| |||||||||||| ||| | ||||||||||||||||||||||| |
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| T |
9294907 |
acctcaccattaggctgac------------tcttcctcacagtaa------------tctcattcaaagttgataatgtggtccatctatgactagctg |
9294832 |
T |
|
| Q |
421 |
atgcacttatgcttgcacagaaactagttaccatcttttgtgctagcttcatcatgctgctctttccctcaggtgatggaatcgctgaaaaattcc |
516 |
Q |
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|| || |||| ||| |||||||| ||||||||||| |||||| ||||||||||||| | |||||||| ||||||||||||||| |||||||||||| |
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| T |
9294831 |
atccatttatactttcacagaaattagttaccatcctttgtgttagcttcatcatggtcctctttccatcaggtgatggaatcactgaaaaattcc |
9294736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 9285695 - 9285588
Alignment:
| Q |
33 |
aaatggaggaaacaagtcttaccctaagcactgagatggagttgccagggtgagaaccatttgcaatatgagcaacttcttgaacagcatttccattaga |
132 |
Q |
| |
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||||||||||| || |||||||| ||| ||| || ||| |||| |||||| | ||| ||||||| |||||| |||| ||||||||| |||| ||||| || |
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| T |
9285695 |
aaatggaggaagcatgtcttaccttaaacacggaaatgcagttaccagggcgcgaaacatttgctatatgaacaacctcttgaacatcattaccattgga |
9285596 |
T |
|
| Q |
133 |
aagaacat |
140 |
Q |
| |
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||| |||| |
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| T |
9285595 |
aagtacat |
9285588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 9289762 - 9289655
Alignment:
| Q |
33 |
aaatggaggaaacaagtcttaccctaagcactgagatggagttgccagggtgagaaccatttgcaatatgagcaacttcttgaacagcatttccattaga |
132 |
Q |
| |
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||||||||||| || |||||||| ||| ||| || ||| |||| |||||| | ||| ||||||| |||||| |||| ||||||||| |||| ||||| || |
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| T |
9289762 |
aaatggaggaagcatgtcttaccttaaacacggaaatgcagttaccagggcgcgaaacatttgctatatgaacaacctcttgaacatcattaccattgga |
9289663 |
T |
|
| Q |
133 |
aagaacat |
140 |
Q |
| |
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||| |||| |
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| T |
9289662 |
aagtacat |
9289655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 9268712 - 9268671
Alignment:
| Q |
230 |
acaaacctgtgatcttttcctttcatctttgaagaaattgaa |
271 |
Q |
| |
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||||||||| |||||||||||||||||| | ||||||||||| |
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| T |
9268712 |
acaaacctgagatcttttcctttcatctgtcaagaaattgaa |
9268671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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