View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16953_low_4 (Length: 459)
Name: NF16953_low_4
Description: NF16953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16953_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 3880801 - 3881232
Alignment:
| Q |
18 |
agaataatagtataacatcttttgcttgtatttatttagctatctgcatggtttaagtaatagttttatacatttgcagttaaagaggttgctgttatgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3880801 |
agaataatagtataacatcttttgcttgtatttatttagctatctgcatggtttaagtaatagttttatacatttgcagtccaagaggttgctgttatgt |
3880900 |
T |
|
| Q |
118 |
taaggctttgtaattgggaccacagttattatcagtgtattaagataccttgaagtcatatcttgattttgaataaatcatgaatcgtagtaaatatttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3880901 |
taaggctttgtaattgggaccacagttattatcagtgtattaagataccttgaagtcatatcttgattttgaataaatcatgaatcgtagtaaatatttg |
3881000 |
T |
|
| Q |
218 |
gataatattcggaaaataggtcttccgattcatgatttgaatctcgatctgaaagctaagcaactcccttttttcatctacttctcagcttgctcttcga |
317 |
Q |
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| T |
3881001 |
gataatattcggaaaataggtcttccgattcatgatttgaatctcgatctgaaagctaagcaactcccttttttcatctacttctcagcttgctcttcga |
3881100 |
T |
|
| Q |
318 |
tctctcaatttaggaatatgcccaaaattaaacatactccgcattgaagcaacgttaatggtctccattgagttgaaaggatgtgacggactgtctgaag |
417 |
Q |
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| T |
3881101 |
tctctcaatttaggaatatgcccaaaattaaacatactccgcattgaagcaacgttaatggtctccattgagttgaaaggatgtgacggactgtctgaag |
3881200 |
T |
|
| Q |
418 |
catcccttaattgtcctctcttgacatctctg |
449 |
Q |
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| T |
3881201 |
catcccttaattgtcctctcttgacatctctg |
3881232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 244 - 445
Target Start/End: Original strand, 3867271 - 3867472
Alignment:
| Q |
244 |
gattcatgatttgaatctcgatctgaaagctaagcaactcccttttttcatctacttctcagcttgctcttcgatctctcaatttaggaatatgcccaaa |
343 |
Q |
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||||||||||||||||||| |||||| |||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
3867271 |
gattcatgatttgaatctcaatctgatagctaagcaacttccgtttttcatctacttctcaggttggtcttcgatctctcaatttaggaatatgcccaaa |
3867370 |
T |
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| Q |
344 |
attaaacatactccgcattgaagcaacgttaatggtctccattgagttgaaaggatgtgacggactgtctgaagcatcccttaattgtcctctcttgaca |
443 |
Q |
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|||||||||||| ||||||||||| | |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3867371 |
attaaacatacttcgcattgaagcgatgttaatggtctcacttgagttgaaaggatgtggtggactgtctgaagcatcccttaattgtcctctcttgaca |
3867470 |
T |
|
| Q |
444 |
tc |
445 |
Q |
| |
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|| |
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| T |
3867471 |
tc |
3867472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 3866924 - 3867065
Alignment:
| Q |
18 |
agaataatagtataacatcttttgcttgtatttatttagctatctgcatggtttaagtaatagttttatacatttgcagttaaagaggttgctgttatgt |
117 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||| || | |||||| |||| | | |
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| T |
3866924 |
agaataataggttaacatcgtttgcttgtatttatttagctatctgcatggtttaagtaatagcttcatacattt-cattcctagaggt---tgttgtat |
3867019 |
T |
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| Q |
118 |
taaggctttgtaa-ttgggaccacagttattatcagtgtattaaga |
162 |
Q |
| |
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|| |||||||||| |||||||||| ||||||||||| || |||||| |
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| T |
3867020 |
tagggctttgtaatttgggaccacggttattatcagcgtgttaaga |
3867065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 258
Target Start/End: Original strand, 15201604 - 15201638
Alignment:
| Q |
224 |
attcggaaaataggtcttccgattcatgatttgaa |
258 |
Q |
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| T |
15201604 |
attcggaaaataggtcttccgattcatgatttgaa |
15201638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 5299122 - 5299150
Alignment:
| Q |
238 |
tcttccgattcatgatttgaatctcgatc |
266 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5299122 |
tcttccgattcatgatttgaatctcgatc |
5299150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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