View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16953_low_9 (Length: 250)
Name: NF16953_low_9
Description: NF16953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16953_low_9 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 17532963 - 17532721
Alignment:
| Q |
8 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17532963 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
17532864 |
T |
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| Q |
108 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaaagaaggtcgatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17532863 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaaagaaggtcgatg |
17532764 |
T |
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| Q |
208 |
ctagtaactatagaagtctggttggtaatctattttatctcac |
250 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17532763 |
ctagtaactatagaagtttggttggtaatctattttatctcac |
17532721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 26410143 - 26410330
Alignment:
| Q |
8 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
107 |
Q |
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|||||||| |||||| ||| | || |||||||||||||| ||||| |||||||||| || ||||||| || ||||||||||||| ||||||||| || |
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| T |
26410143 |
tgagatgagtgatcttggcttgctgcatcattttcttggtattgaggtttaccaagatgaatatggagtttttatttgtcaaaagagatatgctgaaaat |
26410242 |
T |
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| Q |
108 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaa |
195 |
Q |
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|| ||||| |||||||| ||| |||||| || || |||||| |||||||| ||||||| |||||| ||||| |||||||| |||| |
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| T |
26410243 |
atcttgaaaaagtttggcatgaatggctgtaaacctgctgatattcctttagtggtgaatggaaaattaaagaaggaagatggtggaa |
26410330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 35446 - 35204
Alignment:
| Q |
8 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35446 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagttttcatttgtcaaaagaaatatgctgagaaa |
35347 |
T |
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| Q |
108 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaaagaaggtcgatg |
207 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35346 |
atattgaagaattttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaaagaaggtcgatg |
35247 |
T |
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| Q |
208 |
ctagtaactatagaagtctggttggtaatctattttatctcac |
250 |
Q |
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| T |
35246 |
ctagtaactatagaagtttggttggtaatctattttatctcac |
35204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 26898483 - 26898296
Alignment:
| Q |
8 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
107 |
Q |
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|||||||| |||||| ||| | || |||||||||||||| ||||| |||||||||| || ||||||| || ||||||||||||| ||||||||| || |
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| T |
26898483 |
tgagatgagtgatcttggcttgctgcatcattttcttggtattgaggtttaccaagatgaatatggagtttttatttgtcaaaagagatatgctgaaaat |
26898384 |
T |
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| Q |
108 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaa |
195 |
Q |
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|| ||||| |||||||| ||| |||||| || || |||||| |||||||| ||||||| |||||| ||||| |||||||| |||| |
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| T |
26898383 |
atcttgaaaaagtttggcatgaatggctgtaaacctgctgatattcctttagtggtgaatggaaaattaaagaaggaagatggtggaa |
26898296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 24050533 - 24050720
Alignment:
| Q |
8 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
107 |
Q |
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|||||||| |||||| ||| | || |||||||||||||| ||||| |||||||||| || ||||||| || ||||||||||||| ||||||||| || |
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| T |
24050533 |
tgagatgagtgatcttggcttgctgcatcattttcttggtattgaggtttaccaagatgaatatggagtttttatttgtcaaaagagatatgctgaaaat |
24050632 |
T |
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| Q |
108 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaa |
195 |
Q |
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|| ||||| |||||||| ||| |||||| || || |||||| |||||||| ||||||| |||||| ||||| |||||||| |||| |
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| T |
24050633 |
atcttgaaaaagtttggcatgaatggctgtaaacctgctgatattcctttagtggtgaatggaaaattaaagaaggaagatggtggaa |
24050720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 195
Target Start/End: Original strand, 23678257 - 23678444
Alignment:
| Q |
8 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
107 |
Q |
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|||||||| |||||| ||| | || |||||||||||||| ||||| | |||||||| || ||||||| || ||||||||||||| ||||||||| || |
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| T |
23678257 |
tgagatgagtgatcttggcttgctgcatcattttcttggtattgaggtgtaccaagatgaatatggagtttttatttgtcaaaagagatatgctgaaaat |
23678356 |
T |
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| Q |
108 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaa |
195 |
Q |
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|| ||||| |||||||| ||| |||||| || || |||||| |||||||| ||||||| |||||| ||||| |||||||| |||| |
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| T |
23678357 |
atcttgaaaaagtttggcatgaatggctgtaaacctgctgatattcctttagtggtgaatggaaaattaaagaaggaagatggtggaa |
23678444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 14622 - 14530
Alignment:
| Q |
157 |
tagttgtgaatgaaaaattgaagaaagaagatggaggaaagaaggtcgatgctagtaactatagaagtctggttggtaatctattttatctcac |
250 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||| || ||||| |||||||||| ||||| |||||||||||||||||| ||||| |
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| T |
14622 |
tagttgtgaatgaaaa-ttgaagaaagaagttggaggaaagaacgttgatgccagtaactataaaagtccggttggtaatctattttacctcac |
14530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 27206896 - 27206709
Alignment:
| Q |
8 |
tgagatgaatgatctgggcatactacatcattttcttggaattgaaatttaccaagaggatgatggagtcttcatttgtcaaaagaaatatgctgagaaa |
107 |
Q |
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|||||||| |||||| ||| | || |||||||||||||| ||||| |||||||||| || ||||||| || ||||||||||||| ||||||||| || |
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| T |
27206896 |
tgagatgagtgatcttggcttgctgcatcattttcttggtattgaggtttaccaagatgaatatggagtttttatttgtcaaaagagatatgctgaaaat |
27206797 |
T |
|
| Q |
108 |
atattgaagaagtttggaatgtttggctgcaatccaactgatacacctttagttgtgaatgaaaaattgaagaaagaagatggaggaa |
195 |
Q |
| |
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|| ||||| |||||||| || |||||| || || |||||| |||||||| ||||||| |||||| ||||| |||||||| |||| |
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| T |
27206796 |
atcttgaaaaagtttggcataaatggctgtaaacctgctgatattcctttagtggtgaatggaaaattaaagaaggaagatggtggaa |
27206709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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