View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16954_high_10 (Length: 254)
Name: NF16954_high_10
Description: NF16954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16954_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 39453510 - 39453753
Alignment:
| Q |
1 |
accacctgtgatttagtataatgnnnnnnn-acccccactccactcgtagtcatagatacaataatcctatcactttcaacacagcccagccacttataa |
99 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39453510 |
accacctgtgatttagtataatgttttttttacccccactccactcgtagtcatagatacaataatcctatcactttcaacacagcccagccacttataa |
39453609 |
T |
|
| Q |
100 |
tgagtctctcaaactaccaatacaaccaaagagtccttcatactgctttggattctcccaatttgtttacctttattgaatcgttcctttcacttttctg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39453610 |
tgagtctctcaaactaccaatacaaccaaagagtccttcatactgctttggattctcccaatttgtttacctttattgaatcgttcctttcacttttctg |
39453709 |
T |
|
| Q |
200 |
ccaacactctgcaccctctctccaccacactatccctctccttt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39453710 |
ccaacactctgcaccctctctccaccacactatccctctccttt |
39453753 |
T |
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