View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16954_high_8 (Length: 305)
Name: NF16954_high_8
Description: NF16954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16954_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 61 - 292
Target Start/End: Complemental strand, 52009751 - 52009524
Alignment:
| Q |
61 |
ccaaaaggcatctgaatccgttggatgcatctaagggcagaaaannnnnnnnnnntgagtgcttactaatgttatctgcgggaaacaaacggtttgagga |
160 |
Q |
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| T |
52009751 |
ccaaaaggcatctgaatccgttggatgcatctaagggcagaaaaccccccc----tgagtgcttactaatgttatctgcgggaaacaaacggtttgagga |
52009656 |
T |
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| Q |
161 |
ggcagcatnnnnnnntggcagtgagaatgaactgttccttacagaacacactctccattctttcactccgttccaattccagtgtttcacacttcaaatc |
260 |
Q |
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| T |
52009655 |
ggcagcataaaaaaatggcagtgagaatgaactgttccttacagaacacactctccattctttcactccgttccaattccagtgtttcacacttcaaatc |
52009556 |
T |
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| Q |
261 |
cagcaaaccctattttcatttcccttcatctc |
292 |
Q |
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||||||||||||||||||||||||||| |||| |
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| T |
52009555 |
cagcaaaccctattttcatttcccttcttctc |
52009524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 117 - 292
Target Start/End: Complemental strand, 5179897 - 5179722
Alignment:
| Q |
117 |
gagtgcttactaatgttatctgcgggaaacaaacggtttgaggaggcagcatnnnnnnntggcagtgagaatgaactgttccttacagaacacactctcc |
216 |
Q |
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||||||||||||||||||| ||||||||| |||| | ||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |
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| T |
5179897 |
gagtgcttactaatgttatatgcgggaaagaaacagcttgaggaggcagcataaaaaaatggcagtaagaatgaactgttcgttacagaacacactctcc |
5179798 |
T |
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| Q |
217 |
attctttcactccgttccaattccagtgtttcacacttcaaatccagcaaaccctattttcatttcccttcatctc |
292 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||| |||| |
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| T |
5179797 |
attctttcactccgttccaattccaatgtttcacacctcaaatccaacaaaccctatttccatttcccttcttctc |
5179722 |
T |
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