View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16954_high_9 (Length: 294)
Name: NF16954_high_9
Description: NF16954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16954_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 39453755 - 39454047
Alignment:
| Q |
1 |
tctacacaattgctgcctgccaacacataactagnnnnnnnnn---ccattcattgctcaaaactagatataatgacaaacttttcattcttggtctact |
97 |
Q |
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| T |
39453755 |
tctacacaattgctgcctgccaacacataactagaaaaaaaaaaaaccattcattgctcaaaactagatataatgacaaacttttcattcttggtctact |
39453854 |
T |
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| Q |
98 |
ttgacaaaaataaattaaattgattcaattttgaccnnnnnnnnattttgtcacattacaactggctttagaaatatatctcagttaagtcacgttaaat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39453855 |
ttgacaaaaataaattaaattgattcaattttgaccttttttttattttgtcacattacaactggctttagaaatatatctcagttaagtcacgttaaat |
39453954 |
T |
|
| Q |
198 |
ttttctacttagaannnnnnngagttagatgtgaatgccttcaacaagtgacatgatagatagaaattcatggcttcacttatttcatctcac |
290 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
39453955 |
ttttccacttagaatttttttgagttagatgtgaatgccttcaacaagtgacatgatagatagaaattcatggcttcacttaattcatatcac |
39454047 |
T |
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