View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16954_low_12 (Length: 241)
Name: NF16954_low_12
Description: NF16954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16954_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 43659047 - 43659255
Alignment:
| Q |
5 |
atgaactttaataccgtaatgttaaaccttagtcttattaggatactacttgagatctctttgttgttcttatattctaaatgagatgaaaaatttcttt |
104 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43659047 |
atgagctttaataccgtaatgttaaaccttagtcttatt------------gagatctctttgttgttcttatattctaaatgagatgaaaaaaaaaatt |
43659134 |
T |
|
| Q |
105 |
atatacaaataaactttattaaactagtttacaagacatttagtcatttaaatcttctgtatgcctatacacaaaacgacgtatacgttctattcttctt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43659135 |
atatacaaataaactttattaaactagtttacaagacatttagtcatttaaatcttctgtatgcctatacacaaaacgacgtatacgttctattcttctt |
43659234 |
T |
|
| Q |
205 |
acagatttcaggggagtttat |
225 |
Q |
| |
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||||||||||||||||||||| |
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| T |
43659235 |
acagatttcaggggagtttat |
43659255 |
T |
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