View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16954_low_14 (Length: 224)
Name: NF16954_low_14
Description: NF16954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16954_low_14 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 2725119 - 2725326
Alignment:
| Q |
17 |
acacatcaatctagtgtgtttgatgaaaattatatactatttttaaaaattaacctgtttatattgagttcgaactttgaagtgaactgattcatatttg |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2725119 |
acacatcaatctagtgtgtttcatgaaaattatatactatttttaaaaattaacttgtttatattgagtttgaactttgaagtgaactgattcatatttg |
2725218 |
T |
|
| Q |
117 |
catatttttactctcagaacaattttgatgtaatatttaatacaaaattttcaacttagaacggaaacgactttttattatttatggtaatattgcatca |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
2725219 |
catatttttactctaagaacaattttgatgtaatatttaatacaaaattttcaacttagaacggaaacaattttttattatttatggtaaaattgcatca |
2725318 |
T |
|
| Q |
217 |
actgtcct |
224 |
Q |
| |
|
|||||||| |
|
|
| T |
2725319 |
actgtcct |
2725326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University