View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16954_low_4 (Length: 449)
Name: NF16954_low_4
Description: NF16954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16954_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 46309189 - 46308750
Alignment:
| Q |
1 |
tttccaacataaacacataaggtgttgctatttaattacaccatacaaccatatcaacagtcacaaaataagcgtcgatccaaaaagtaaaataatggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
46309189 |
tttccaacataaacacataaggtgttgctatttaattacaccatacaaccatatcaccgttcacaaaataagcgtcgatccaaaaagtaaaataatggat |
46309090 |
T |
|
| Q |
101 |
atttatacccaaaccaactaatatctaggaacaagtgcttctgcaatatgcattagaaaattccttaagctttctttctattgttttataaacccaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46309089 |
atttatacccaaaccaactaatatctaggaacaagtgcttctgcaatatgcattagaaaattccttaagctttctttctattgttttataaacccaaatg |
46308990 |
T |
|
| Q |
201 |
gtcatcctttctatttgttaaggttatatataattatggaaatatcaaaacactgaaaagagtagtctttactttaacccttcattaacttttgtcttaa |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46308989 |
gtcatcctttctattttttaaggttatatataattatggaaatatcaaaacactgaaaagagtagtctttactttaacccttcattaacttttgtcttaa |
46308890 |
T |
|
| Q |
301 |
tcgagtcatgaatcacaatgggaagatgctgagtcaaagagagctcttggatatgacatccccaaaacgaacaaaccattgagcattagacaaattgtta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46308889 |
tcgagtcatgaatcacaatgggaagatgctgagtcaaagagagctcttggatatgacatccccaaaacgaacaaaccattgagcattagacaagttgtta |
46308790 |
T |
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| Q |
401 |
tcctgctgaggttgtagtccatcgaattttctgtgctgct |
440 |
Q |
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| T |
46308789 |
tcctgctgaggttgtagtccatccaattttctgtggtgct |
46308750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 46309299 - 46309203
Alignment:
| Q |
1 |
tttccaacataaacacataa-ggtgttgctatttaattacaccatacaaccatatcaacagtcacaaaataagcgtcgatccaaaaagtaaaataat |
96 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46309299 |
tttccaacataaacacataaaggtgttgctatttaattacaccatacaaccatatcaacggtcacaaaataagcgtcgatccaaaaagtaaaataat |
46309203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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