View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16954_low_5 (Length: 363)
Name: NF16954_low_5
Description: NF16954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16954_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 160 - 353
Target Start/End: Original strand, 23415485 - 23415676
Alignment:
| Q |
160 |
cagatttagtacacataaatcattaaaataacaatagcacgagtcttgtatctgtaaccctattgtaccacacaagcaagtaaaatatcattaattcaac |
259 |
Q |
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| T |
23415485 |
cagattttgtacacataaatcattaaaataacaatagcacgagtcttgtatctgtaacccaattgtaccacacaagcaagtaaaatatcattaattcaac |
23415584 |
T |
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| Q |
260 |
cactttcatacacaaaagaatcaacaagatcccattagttcattacaacttagaaaagtaaaatactaaaaattttaaaaacctaatggttcat |
353 |
Q |
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| T |
23415585 |
cactttaatacacaaaagaatcaacaagatcccattag--cattacaacttagaaaagtaaaatactaaaaatttaaaaaacctaatggttcat |
23415676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 23415293 - 23415435
Alignment:
| Q |
20 |
ctccactagttcaaacttcaaattacagactcagtaaaattaaataatcataaacaatcaatgcacacaagtattctgcatcactagatcactaaccaca |
119 |
Q |
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| T |
23415293 |
ctccactagttcaaacttcaaattacagactcagtaaaattaattaatcataaacaatcaatgcacacaagtattctgcatcactagagcactaaacaca |
23415392 |
T |
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| Q |
120 |
actttttgccaagttatagaa--aaataaaatacgaataattc |
160 |
Q |
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| T |
23415393 |
actttttgccaagttatagaaagaaataaaatacgaataattc |
23415435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 23408453 - 23408518
Alignment:
| Q |
263 |
tttcatacacaaaaga-atcaacaagatcccattagttcattacaacttagaaaagtaaaatactaa |
328 |
Q |
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| T |
23408453 |
tttcttacacaaaagacatcaaca-gatcccattagttcattacaactcagaaaattaaaacactaa |
23408518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 23414972 - 23415025
Alignment:
| Q |
243 |
aatatcattaattcaaccactttcatacacaaaagaatcaacaagatcccatta |
296 |
Q |
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| T |
23414972 |
aatatcattaattccaccattatcatacacaaaaggatcaaccagatcccatta |
23415025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 26436759 - 26436696
Alignment:
| Q |
243 |
aatatcattaattcaaccactttcatacacaaaagaatcaacaagatcccattagttcattaca |
306 |
Q |
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| T |
26436759 |
aatattattaattctaccattttcttcaacagaaggatcaacaagatcccattagttcattaca |
26436696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 24298506 - 24298442
Alignment:
| Q |
247 |
tcattaattcaaccactttcatacac-aaaagaatcaacaagatcccattagttcattacaactt |
310 |
Q |
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|||||||||| |||||| |||||||| ||||| ||||||||||| | |||| ||||| ||||||| |
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| T |
24298506 |
tcattaattccaccactatcatacacaaaaaggatcaacaagatacaattacttcatcacaactt |
24298442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 43698635 - 43698699
Alignment:
| Q |
247 |
tcattaattcaaccactttcatacacaaaa-gaatcaacaagatcccattagttcattacaactt |
310 |
Q |
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|||||||||| |||||||| |||||||||| | | |||| | ||||||||| ||||||||||||| |
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| T |
43698635 |
tcattaattctaccactttgatacacaaaagggaccaacgatatcccattacttcattacaactt |
43698699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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