View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16954_low_6 (Length: 314)

Name: NF16954_low_6
Description: NF16954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16954_low_6
NF16954_low_6
[»] chr2 (10 HSPs)
chr2 (1-310)||(41573212-41573540)
chr2 (194-304)||(11017489-11017598)
chr2 (193-259)||(44920988-44921053)
chr2 (194-283)||(31342696-31342784)
chr2 (199-297)||(24479189-24479286)
chr2 (195-287)||(22966558-22966649)
chr2 (194-259)||(15513699-15513763)
chr2 (194-255)||(30267035-30267095)
chr2 (193-287)||(7702460-7702553)
chr2 (194-259)||(7718217-7718281)
[»] chr8 (17 HSPs)
chr8 (1-156)||(27753073-27753227)
chr8 (194-280)||(6403625-6403710)
chr8 (194-259)||(6801834-6801898)
chr8 (194-283)||(28249055-28249143)
chr8 (194-283)||(45356092-45356180)
chr8 (194-288)||(25637676-25637769)
chr8 (194-283)||(17634451-17634539)
chr8 (194-283)||(25638839-25638927)
chr8 (194-280)||(31347381-31347466)
chr8 (194-288)||(29345463-29345557)
chr8 (167-225)||(9438765-9438823)
chr8 (194-237)||(5528775-5528818)
chr8 (194-297)||(5650911-5651013)
chr8 (161-212)||(26173781-26173832)
chr8 (194-287)||(19369886-19369978)
chr8 (194-259)||(29553661-29553725)
chr8 (158-203)||(44719153-44719198)
[»] chr5 (13 HSPs)
chr5 (161-308)||(42076046-42076192)
chr5 (193-283)||(7410855-7410944)
chr5 (194-283)||(5079044-5079132)
chr5 (194-299)||(37233064-37233168)
chr5 (194-287)||(17037575-17037667)
chr5 (194-255)||(31068971-31069030)
chr5 (194-285)||(40401987-40402077)
chr5 (194-259)||(9354393-9354457)
chr5 (194-237)||(9333586-9333629)
chr5 (194-237)||(10869469-10869512)
chr5 (194-227)||(18191884-18191917)
chr5 (194-259)||(30786299-30786363)
chr5 (195-287)||(19985028-19985119)
[»] chr7 (14 HSPs)
chr7 (214-310)||(26701083-26701177)
chr7 (193-287)||(16086518-16086611)
chr7 (194-297)||(26619070-26619171)
chr7 (194-297)||(30089767-30089869)
chr7 (193-307)||(3234358-3234471)
chr7 (193-287)||(20277336-20277429)
chr7 (194-283)||(4685383-4685471)
chr7 (192-237)||(16170301-16170346)
chr7 (194-287)||(26621067-26621159)
chr7 (193-280)||(10022155-10022241)
chr7 (194-259)||(26224982-26225046)
chr7 (194-259)||(26608543-26608607)
chr7 (194-287)||(9242460-9242552)
chr7 (194-259)||(26205419-26205483)
[»] chr3 (17 HSPs)
chr3 (194-280)||(16457314-16457399)
chr3 (194-287)||(2943190-2943282)
chr3 (194-283)||(13846024-13846112)
chr3 (194-288)||(2550198-2550291)
chr3 (193-259)||(9633446-9633511)
chr3 (194-283)||(7407734-7407822)
chr3 (189-297)||(27713405-27713511)
chr3 (194-285)||(26707891-26707981)
chr3 (194-287)||(1627923-1628015)
chr3 (194-283)||(1654608-1654696)
chr3 (202-287)||(36035329-36035413)
chr3 (209-297)||(26735681-26735768)
chr3 (194-260)||(1613216-1613281)
chr3 (159-207)||(5498455-5498503)
chr3 (195-233)||(27259474-27259512)
chr3 (194-259)||(5498510-5498574)
chr3 (172-209)||(27713509-27713546)
[»] chr1 (8 HSPs)
chr1 (194-296)||(12189984-12190085)
chr1 (194-281)||(3399654-3399740)
chr1 (194-259)||(13208644-13208708)
chr1 (194-259)||(16222810-16222874)
chr1 (194-237)||(897487-897530)
chr1 (194-237)||(5911689-5911732)
chr1 (194-256)||(1843984-1844045)
chr1 (194-299)||(39368603-39368708)
[»] chr6 (11 HSPs)
chr6 (194-283)||(16734837-16734925)
chr6 (194-283)||(11936747-11936835)
chr6 (194-283)||(11948727-11948815)
chr6 (194-283)||(15361747-15361835)
chr6 (194-287)||(23264472-23264564)
chr6 (195-310)||(4485518-4485632)
chr6 (194-237)||(29667940-29667983)
chr6 (194-259)||(12591865-12591929)
chr6 (194-237)||(15690470-15690513)
chr6 (194-288)||(14669321-14669414)
chr6 (194-287)||(6684126-6684217)
[»] scaffold0576 (1 HSPs)
scaffold0576 (194-283)||(6731-6819)
[»] chr4 (9 HSPs)
chr4 (194-283)||(43600299-43600387)
chr4 (161-297)||(21317441-21317572)
chr4 (194-255)||(53300383-53300443)
chr4 (194-297)||(24558961-24559063)
chr4 (194-237)||(48464072-48464115)
chr4 (195-237)||(21539296-21539338)
chr4 (194-255)||(47066042-47066102)
chr4 (194-278)||(4904125-4904208)
chr4 (194-259)||(1152076-1152140)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 41573212 - 41573540
Alignment:
Q  1 tccaaccatcgccactttgtggttagaaagcaggaagaggctaggatatttctcccctgaacgaaatatctcccctccaaactacatcccaaaatctctt 100  Q
    ||||||||||||| |||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||| |||| |||||||| ||  |    
T  41573212 tccaaccatcgcctctttttggttagaaagcaagaagagtctaggatatttctccccggaacgaaatatctaccctccaagctacgtcccaaaaactagt 41573311  T
Q  101 gttcaccccattcctaacctttctagtaagttcggaattaaaccaatttgacacatatatcactacaacaaaattgagatttagtaacattca------- 193  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  41573312 gttcacaccattcctaacctttctagtaagttcggaattaaaccaatttgacacatatatcactacaacaaaattgagatttagtaacattcaaaaaatg 41573411  T
Q  194 -------------aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttata 280  Q
                 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  41573412 taactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgtt-aggtaaaccccgtgttactaaattacttcaataacattttata 41573510  T
Q  281 gtattattaataacatttagaaaatgttgc 310  Q
    ||||||||| ||||||||||||||||||||    
T  41573511 gtattattagtaacatttagaaaatgttgc 41573540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 304
Target Start/End: Original strand, 11017489 - 11017598
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattattaataa 293  Q
    |||| |||||||||||||||||||||||| || | ||||||||| ||||||  |||||||||||||   ||||||||||| ||||||||||||| | |||    
T  11017489 aaaattgttactaattaaatttagtaacatttgaccaattgtta-ggtaaagtccgtgttactaaaaagcttcagtaacactttatagtattatcagtaa 11017587  T
Q  294 catttagaaaa 304  Q
    |||||| ||||    
T  11017588 catttaaaaaa 11017598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 44920988 - 44921053
Alignment:
Q  193 aaaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    ||||||||||||||||||||||||||||||  |||||||||||| ||||||| | ||||||||||||    
T  44920988 aaaaaatgttactaattaaatttagtaacacctaaacaattgtt-aggtaaagctcgtgttactaaa 44921053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 31342784 - 31342696
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| |||| || |||||||||| || |||| |||||||||||||| |  || ||| |||||||||||||    
T  31342784 aaaaatgttactaattaaatttagcaacacttgaacaattgtt-agataaagcccgtgttactaaagtgttttagttacattttatagta 31342696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 24479189 - 24479286
Alignment:
Q  199 tgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattattaataacatt 297  Q
    |||||||||||||||||||||||| || ||||||| || ||||||| | ||||||||||||   ||| ||| | |||||||||||||||  ||||||||    
T  24479189 tgttactaattaaatttagtaacatttgaacaattctt-aggtaaagctcgtgttactaaagagctttagttatattttatagtattatctataacatt 24479286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 22966558 - 22966649
Alignment:
Q  195 aaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    ||||| |||||||| ||||||||| ||| ||||||||||||| ||||||| ||| ||||||||||   ||| ||| |||||||| ||||||||    
T  22966558 aaaatattactaatgaaatttagttacatttaaacaattgtt-aggtaaagcccctgttactaaagacctttagttacattttagagtattat 22966649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 15513699 - 15513763
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    ||||||||||||| |||||||| |||||| || |||||||||| ||||||| | ||||||||||||    
T  15513699 aaaaatgttactagttaaattttgtaacacttgaacaattgtt-aggtaaagctcgtgttactaaa 15513763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 30267035 - 30267095
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttac 255  Q
    |||||||||| ||||||||||||||||||  | |||||||||| ||||||| ||||||||||    
T  30267035 aaaaatgttagtaattaaatttagtaacacctgaacaattgtt-aggtaaagcccgtgttac 30267095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 7702460 - 7702553
Alignment:
Q  193 aaaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    ||||||||||| |||||||| ||||||||| ||  ||||||||| ||||||| ||| | ||||||||   ||| ||| ||||||| |||||||||    
T  7702460 aaaaaatgttattaattaaaattagtaacatttgtacaattgtt-aggtaaagcccatattactaaagagctttagttacattttgtagtattat 7702553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 7718217 - 7718281
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    |||||| ||||||||||||||||||||||  | |||||||||| || ||||  |||||||||||||    
T  7718217 aaaaatattactaattaaatttagtaacacatgaacaattgtt-agataaagtccgtgttactaaa 7718281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 27753227 - 27753073
Alignment:
Q  1 tccaaccatcgccactttgtggttagaaagcaggaagaggctaggatatttctcccctgaacgaaatatctcccctccaaactacatcccaaaatctctt 100  Q
    ||||||||||||| |||| ||| ||||||||  |||||| ||||| ||||||||||  ||||||||| |||||||||||| ||||||||||||| ||| |    
T  27753227 tccaaccatcgcctctttttgggtagaaagcgagaagagtctagggtatttctccca-gaacgaaatctctcccctccaagctacatcccaaaaactcgt 27753129  T
Q  101 gttcaccccattcctaacctttctagtaagttcggaattaaaccaatttgacacat 156  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27753128 gttcacaccattcctaacctctctagtaagttcggaattaaaccaatttgacacat 27753073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 280
Target Start/End: Original strand, 6403625 - 6403710
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttata 280  Q
    ||||||||||||||||||||||||||||| || | |||||||| ||||||| ||||||||| ||||   ||||||||||||||||||    
T  6403625 aaaaatgttactaattaaatttagtaacatttgagcaattgtt-aggtaaagcccgtgttattaaaaagcttcagtaacattttata 6403710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 6801898 - 6801834
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||    
T  6801898 aaaaatgttactaattaaatttagtaacagttgaacaattgtt-aggtaaagcccctgttactaaa 6801834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 28249143 - 28249055
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| |||| || |||||||||| ||||||| |||||||||||||| |  || ||| |||||||||||||    
T  28249143 aaaaatgttactaattaaatttagcaacacttgaacaattgtt-aggtaaagcccgtgttactaaagtgttttagttacattttatagta 28249055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 45356180 - 45356092
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| |||| || |||||||||| ||||||| |||||||||||||| |  || ||| |||||||||||||    
T  45356180 aaaaatgttactaattaaatttagcaacacttgaacaattgtt-aggtaaagcccgtgttactaaagtgttttagttacattttatagta 45356092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 25637676 - 25637769
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattatt 288  Q
    |||| ||||||||||||||||||| |||| |  ||||||||||| |||||| ||||||||||||||  | || ||| ||||||||||||||||||    
T  25637676 aaaactgttactaattaaatttagcaacactcgaacaattgtta-ggtaaagcccgtgttactaaagaattttagttacattttatagtattatt 25637769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 17634539 - 17634451
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    ||||||||||||||||||||||| ||||| || |||||||| | ||||||| ||||||||||||||  | || ||| |||||||||||||    
T  17634539 aaaaatgttactaattaaatttaataacacttgaacaattgat-aggtaaagcccgtgttactaaagaaatttagttacattttatagta 17634451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 25638839 - 25638927
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| |||| || |||||||||| ||||||| ||| |||||||||| |  || ||| |||||||||||||    
T  25638839 aaaaatgttactaattaaatttagcaacacttgaacaattgtt-aggtaaaacccatgttactaaagtgttttagttacattttatagta 25638927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 280
Target Start/End: Original strand, 31347381 - 31347466
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttata 280  Q
    ||||||| ||||||||||||||||||||| || | |||||||| || ||||||| ||||||||||    ||||||||||||||||||    
T  31347381 aaaaatgctactaattaaatttagtaacatttgatcaattgtt-agataaatcctgtgttactaaccatcttcagtaacattttata 31347466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 29345463 - 29345557
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa-ttacttcagtaacattttatagtattatt 288  Q
    |||||| |||||||||||||||||||||  || |||||||||| ||||||| ||| | ||||||||   |||| ||| ||||||||||||||||||    
T  29345463 aaaaatattactaattaaatttagtaacctttgaacaattgtt-aggtaaagcccctcttactaaacaaactttagttacattttatagtattatt 29345557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 9438823 - 9438765
Alignment:
Q  167 aacaaaattgagatttagtaacattcaaaaaatgttactaattaaatttagtaacagtt 225  Q
    ||||||| ||||||||||||||| |  ||||||||||||| ||||| ||||||||||||    
T  9438823 aacaaaaatgagatttagtaacacttgaaaaatgttactatttaaacttagtaacagtt 9438765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 5528775 - 5528818
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgtta 237  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  5528775 aaaaatgttactaattaaatttagcaacactcaaacaattgtta 5528818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 5651013 - 5650911
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattattaataa 293  Q
    |||||||||||||||| ||||||| |||| || |||||||||| ||||||| ||| |||||| |||   ||| |||  |||||||| |||||||  ||||    
T  5651013 aaaaatgttactaattcaatttagcaacatttgaacaattgtt-aggtaaaacccttgttacaaaaaagctttagttgcattttatggtattatctataa 5650915  T
Q  294 catt 297  Q
    ||||    
T  5650914 catt 5650911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 26173781 - 26173832
Alignment:
Q  161 cactacaacaaaattgagatttagtaacattcaaaaaatgttactaattaaa 212  Q
    ||||||||||||| ||||||||||||||| | ||||||| ||||||| ||||    
T  26173781 cactacaacaaaaatgagatttagtaacacttaaaaaatattactaaataaa 26173832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 19369978 - 19369886
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    |||||||||||||||||||||| | |||| |  |||||||||| || ||||  |||||||||||||    || ||| |||||||||||||||||    
T  19369978 aaaaatgttactaattaaattttgcaacactcgaacaattgtt-agataaagtccgtgttactaaagagttttagttacattttatagtattat 19369886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 29553661 - 29553725
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    |||||||||||||||||||||||| |||| || | |||||||| || |||| | ||||||||||||    
T  29553661 aaaaatgttactaattaaatttagcaacatttgagcaattgtt-agttaaagcgcgtgttactaaa 29553725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 44719198 - 44719153
Alignment:
Q  158 tatcactacaacaaaattgagatttagtaacattcaaaaaatgtta 203  Q
    ||||||||||||| | ||||||||||||||||||  ||||||||||    
T  44719198 tatcactacaacatacttgagatttagtaacatttgaaaaatgtta 44719153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 42076046 - 42076192
Alignment:
Q  161 cactacaacaaaattgagatttagtaacattcaaaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaat 260  Q
    |||||||||| ||||||||| |||||||| |  |||| |||||||||||||||||||||||| || |||||||||| || ||||  || ||||||||||     
T  42076046 cactacaacataattgagatctagtaacaattgaaaattgttactaattaaatttagtaacatttgaacaattgtt-agataaagtccatgttactaaaa 42076144  T
Q  261 tacttcagtaacattttatagtattattaataacatttagaaaatgtt 308  Q
      |||||| || |||||||||||||||   ||||||||| ||| ||||    
T  42076145 agcttcaggaatattttatagtattatcggtaacatttaaaaattgtt 42076192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 283
Target Start/End: Original strand, 7410855 - 7410944
Alignment:
Q  193 aaaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    ||||||||||||||||||||||||| |||| || |||||||||| ||||||| |||||||||||||| |  || ||| |||||||||||||    
T  7410855 aaaaaatgttactaattaaatttagcaacacttgaacaattgtt-aggtaaagcccgtgttactaaagtgttttagttacattttatagta 7410944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 5079132 - 5079044
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| |||| || |||||||||| ||||||| |||||||||||||| |  || ||| |||||||||||||    
T  5079132 aaaaatgttactaattaaatttagcaacacttgaacaattgtt-aggtaaagcccgtgttactaaagtgttttagttacattttatagta 5079044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 37233064 - 37233168
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattattaataa 293  Q
    ||||| ||||||||||||||||||||||| || | |||||||| ||||| |  |||||||||||||    |||||||||||||||||||||||| | |||    
T  37233064 aaaaaagttactaattaaatttagtaacatttgagcaattgtt-aggtatagtccgtgttactaaaaagtttcagtaacattttatagtattatcagtaa 37233162  T
Q  294 cattta 299  Q
    ||||||    
T  37233163 cattta 37233168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 17037575 - 17037667
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    ||||||||||||||||||||||||||||| || |||||||||| |||||||  | |||||||||||    || ||| |||||||||||||||||    
T  17037575 aaaaatgttactaattaaatttagtaacatttgaacaattgtt-aggtaaagtcagtgttactaaagagttttagttacattttatagtattat 17037667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 31069030 - 31068971
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttac 255  Q
    ||||||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||    
T  31069030 aaaaatgttactaattaaatttagtaaca-ttgaacaattgtt-aggtaaagcccgtgttac 31068971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 40402077 - 40401987
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtatt 285  Q
    ||||||||||||||||||||||||| ||  || |||||||||| |||||||  | ||||| |||||   |||||| ||||||||||||||||    
T  40402077 aaaaatgttactaattaaatttagttacgtttgaacaattgtt-aggtaaagtctgtgttgctaaaaagcttcagcaacattttatagtatt 40401987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 9354457 - 9354393
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    ||||||||||||||||||||||| ||||| || | |||||||| ||||||| ||| ||||||||||    
T  9354457 aaaaatgttactaattaaatttaataacatttgagcaattgtt-aggtaaagcccatgttactaaa 9354393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 9333629 - 9333586
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgtta 237  Q
    ||||||||||||||||||||||||||||| || | |||||||||    
T  9333629 aaaaatgttactaattaaatttagtaacatttgagcaattgtta 9333586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 10869469 - 10869512
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgtta 237  Q
    |||| |||||||||||||||||||||||| || |||||||||||    
T  10869469 aaaattgttactaattaaatttagtaacatttgaacaattgtta 10869512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 18191917 - 18191884
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaa 227  Q
    ||||||||||||||||||||||||||||| ||||    
T  18191917 aaaaatgttactaattaaatttagtaacatttaa 18191884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 30786299 - 30786363
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    |||||||||||| ||| |||||||||||| || || ||||||| |||||||| || ||||||||||    
T  30786299 aaaaatgttactgattcaatttagtaacatttgaataattgtt-aggtaaatgccttgttactaaa 30786363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 19985028 - 19985119
Alignment:
Q  195 aaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    |||||||||||||||| ||||||||||| || || ||||||| |||||||  ||  |||||||||    || ||| |||||||||||||||||    
T  19985028 aaaatgttactaattagatttagtaacatttgaataattgtt-aggtaaagtccaggttactaaagagttttagttacattttatagtattat 19985119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 310
Target Start/End: Original strand, 26701083 - 26701177
Alignment:
Q  214 ttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattattaataacatttagaaaatgttgc 310  Q
    ||||||||||||   ||||||||| |||||| ||||||||||||||| |||||||||||| ||||| ||||||||| ||||||| ||||||||||||    
T  26701083 ttagtaacagttggccaattgtta-ggtaaagcccgtgttactaaataacttcagtaacactttat-gtattattagtaacattcagaaaatgttgc 26701177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 16086518 - 16086611
Alignment:
Q  193 aaaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    ||||| |||||||||||||||||| ||||| || || |||||||| |||||| | | ||||||| |||  |||||||||||||||||||||||||    
T  16086518 aaaaactgttactaattaaatttaataacatttgaataattgtta-ggtaaagctcatgttacttaatagcttcagtaacattttatagtattat 16086611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 26619171 - 26619070
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattattaataa 293  Q
    |||||||||||| |||||||||| ||||| || |||||||||  ||||||||||  ||||||||||  |||| ||| |||||| |||||||||||  |||    
T  26619171 aaaaatgttactgattaaatttattaacatttgaacaattgt--aggtaaatcctatgttactaaagaactttagttacatttgatagtattatttgtaa 26619074  T
Q  294 catt 297  Q
    ||||    
T  26619073 catt 26619070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 30089767 - 30089869
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattattaataa 293  Q
    |||||||||||| |||| ||||||||||| || |||||||||| ||| ||| ||| ||||||||||   ||| ||| ||||||||||||||||||  |||    
T  30089767 aaaaatgttactgattatatttagtaacatttgaacaattgtt-aggaaaagcccatgttactaaagagctttagttacattttatagtattatttttaa 30089865  T
Q  294 catt 297  Q
    ||||    
T  30089866 catt 30089869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 307
Target Start/End: Original strand, 3234358 - 3234471
Alignment:
Q  193 aaaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattattaata 292  Q
    |||||||| |||||| | |||||||||||| || | |||||  | |||||||  ||||||||||||||  |||||||||||||| || ||||||||| ||    
T  3234358 aaaaaatggtactaaattaatttagtaacatttgaccaatttattaggtaaagtccgtgttactaaatagcttcagtaacatttaat-gtattattagta 3234456  T
Q  293 acatttagaaaatgt 307  Q
    ||||| | |||||||    
T  3234457 acattcaaaaaatgt 3234471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 20277429 - 20277336
Alignment:
Q  193 aaaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||| ||||||| | | ||||||||||   ||| ||| ||||| |||||||||||    
T  20277429 aaaaaatattattaattaaatttagtaacatttaaacaattgtt-aggtaaagcacctgttactaaagagctttagttacattatatagtattat 20277336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 4685471 - 4685383
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||| ||||||||||||| |||| || |||||||||| ||||||| ||||| |||||||| |  || ||| |||||||||||||    
T  4685471 aaaaatgttagtaattaaatttagcaacacttgaacaattgtt-aggtaaagcccgtattactaaagtgttttagttacattttatagta 4685383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 16170301 - 16170346
Alignment:
Q  192 caaaaaatgttactaattaaatttagtaacagttaaacaattgtta 237  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||    
T  16170301 caaaaagtgttactaattaaatttagtaacacttaaacaattgtta 16170346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 26621159 - 26621067
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    |||||||||||| ||||||||||| |||| ||||||||||||| || ||||  || ||||||||||   ||| ||| |||||||||||||||||    
T  26621159 aaaaatgttactgattaaatttagcaacatttaaacaattgtt-agataaaagccatgttactaaagagctttagttacattttatagtattat 26621067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 10022155 - 10022241
Alignment:
Q  193 aaaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttata 280  Q
    ||||||||||||||||||| ||||||||||  | |||||||||| ||||||| | ||||||||||||  | || ||| ||||||||||    
T  10022155 aaaaaatgttactaattaagtttagtaacacatgaacaattgtt-aggtaaagctcgtgttactaaagaattttagttacattttata 10022241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 26225046 - 26224982
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    ||||||| ||||||||||||||||||||| || ||||||| || ||||||| || |||||||||||    
T  26225046 aaaaatgatactaattaaatttagtaacacttgaacaattatt-aggtaaagccggtgttactaaa 26224982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 26608607 - 26608543
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    |||||||||||| |||||||||||||||| || |||||||||| || |||| ||| ||||||||||    
T  26608607 aaaaatgttactgattaaatttagtaacatttgaacaattgtt-agataaagcccatgttactaaa 26608543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 9242552 - 9242460
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    |||| ||||||||||||||||| |||||| || |||||||||| || ||||  || ||||||||||    || ||| |||||||||||||||||    
T  9242552 aaaattgttactaattaaattttgtaacacttgaacaattgtt-agataaagtccatgttactaaagagttttagttacattttatagtattat 9242460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 26205483 - 26205419
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    ||||||||||||||||||||||||||||| || || ||||| | ||||||| |  |||||||||||    
T  26205483 aaaaatgttactaattaaatttagtaacacttgaaaaattggt-aggtaaagctggtgttactaaa 26205419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 280
Target Start/End: Complemental strand, 16457399 - 16457314
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttata 280  Q
    ||||||||||||||||||||||||||||| || | |||||||| ||||||| | ||||||||||||   ||||||||||||||||||    
T  16457399 aaaaatgttactaattaaatttagtaacatttgagcaattgtt-aggtaaagctcgtgttactaaaaagcttcagtaacattttata 16457314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 2943282 - 2943190
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    ||||||||||||||||||||||||||||| |  |||||||||| |||| || |||||||||||||| |  || ||| |||||||||||||||||    
T  2943282 aaaaatgttactaattaaatttagtaacattcgaacaattgtt-aggttaagcccgtgttactaaagtgttttagttacattttatagtattat 2943190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 13846024 - 13846112
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| |||| || |||||||||| ||||||| |||||||||||||| |  || ||| |||||||||||||    
T  13846024 aaaaatgttactaattaaatttagcaacacttgaacaattgtt-aggtaaagcccgtgttactaaagtgttttagttacattttatagta 13846112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 2550198 - 2550291
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattatt 288  Q
    |||||||||||||||||||||||| |||| || |||||||||| ||||||| || ||||||||||| |  || ||| ||||||||||||| ||||    
T  2550198 aaaaatgttactaattaaatttagcaacacttgaacaattgtt-aggtaaagcctgtgttactaaagtgttttagttacattttatagtactatt 2550291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 9633511 - 9633446
Alignment:
Q  193 aaaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||| ||||||||||    
T  9633511 aaaaaatgttactaattaaatttagttacatttaaacaattgtt-aggtaaagcccctgttactaaa 9633446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 7407822 - 7407734
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||| ||||||||||||||||| |||| || |||||||||| ||||||| |||||||||||||| |  || ||| |||||||||||||    
T  7407822 aaaaatattactaattaaatttagcaacacttgaacaattgtt-aggtaaagcccgtgttactaaagtgttttagttacattttatagta 7407734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 297
Target Start/End: Complemental strand, 27713511 - 27713405
Alignment:
Q  189 attcaaaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattatt 288  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||||||| ||| ||| ||  |||||||||||   || || || ||||||||||||||||    
T  27713511 attcaaaaaa-gttactaattaaatttagtaacatttaaataattgtt-aggcaaaacctatgttactaaatagttttagcaatattttatagtattatt 27713414  T
Q  289 aataacatt 297  Q
    | |||||||    
T  27713413 agtaacatt 27713405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 26707891 - 26707981
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtatt 285  Q
    ||||||||||||||||||||||||||||| || |||||||||| |||||||  |  ||||||||||    ||||||||||||| ||||||||    
T  26707891 aaaaatgttactaattaaatttagtaacatttgaacaattgtt-aggtaaagtctctgttactaaagaggttcagtaacatttcatagtatt 26707981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 1628015 - 1627923
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    |||||| |||||||||||||||||||||| || |||||||||||| |||||  ||||||||| |||    || ||| |||||||||||||||||    
T  1628015 aaaaatattactaattaaatttagtaacacttgaacaattgttaa-gtaaagtccgtgttacaaaagagttttagttacattttatagtattat 1627923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 1654608 - 1654696
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| |||| || |||||||||||| ||||| || |||||| |||| |  || ||| |||||||||||||    
T  1654608 aaaaatgttactaattaaatttagcaacacttgaacaattgttaa-gtaaagcctgtgttattaaagtgttttagttacattttatagta 1654696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 36035329 - 36035413
Alignment:
Q  202 tactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    ||||||||||||||||||||| ||  ||||||||| ||||||| | ||||||||||||   ||| ||| |||||||||||||||||    
T  36035329 tactaattaaatttagtaacaattgtacaattgtt-aggtaaagctcgtgttactaaagagctttagttacattttatagtattat 36035413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 26735681 - 26735768
Alignment:
Q  209 taaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattattaataacatt 297  Q
    |||||||||||||| || ||||||||||| ||||||  || ||||||||||   ||||| |||||||| |||||||||||| |||||||    
T  26735681 taaatttagtaacatttgaacaattgtta-ggtaaaatccatgttactaaagagcttcaataacatttcatagtattattagtaacatt 26735768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 1613281 - 1613216
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaat 260  Q
    |||||||||||||| ||||||||||||||||| | ||||| || ||||||| ||| |||||||||||    
T  1613281 aaaaatgttactaaataaatttagtaacagttgaccaatt-tttaggtaaagcccctgttactaaat 1613216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 5498455 - 5498503
Alignment:
Q  159 atcactacaacaaaattgagatttagtaacattcaaaaaatgttactaa 207  Q
    |||||||||||| |||||||||||||||||| | ||||||||| |||||    
T  5498455 atcactacaacataattgagatttagtaacaattaaaaaatgtaactaa 5498503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 27259512 - 27259474
Alignment:
Q  195 aaaatgttactaattaaatttagtaacagttaaacaatt 233  Q
    |||||||||||||||||||||||||||| || |||||||    
T  27259512 aaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 5498510 - 5498574
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    ||||||||||||||||||||||||||||   | |||||||||| ||||||| ||  ||||||||||    
T  5498510 aaaaatgttactaattaaatttagtaacttctgaacaattgtt-aggtaaaacctatgttactaaa 5498574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 27713546 - 27713509
Alignment:
Q  172 aattgagatttagtaacattcaaaaaatgttactaatt 209  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  27713546 aattgagatttagtaacatttaaaaaatgtaactaatt 27713509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 12189984 - 12190085
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattattaataa 293  Q
    |||||| |||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||    || |||||  |||||||||||||||| |||    
T  12189984 aaaaatattactaattaaatttagtaacatttgaacaattgtt-aggtaaagcccgtgttactaaagagttttagtaattttttatagtattattagtaa 12190082  T
Q  294 cat 296  Q
    |||    
T  12190083 cat 12190085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 3399654 - 3399740
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatag 281  Q
    ||||||||||||||||||||||||||||| || |||||||||| |||||||  |  |||||||||||  |||| |||||| |||||||    
T  3399654 aaaaatgttactaattaaatttagtaacatttgaacaattgtt-aggtaaaatctatgttactaaatagcttcggtaacactttatag 3399740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 13208644 - 13208708
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    |||||||||||||||||||||||||| || || ||| |||||| ||||||| ||||||||||||||    
T  13208644 aaaaatgttactaattaaatttagtaccacttgaaccattgtt-aggtaaaacccgtgttactaaa 13208708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 16222810 - 16222874
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    ||||||||||||||| ||||||||||||| || || ||||||| ||||||| ||||||||||||||    
T  16222810 aaaaatgttactaataaaatttagtaacacttgaataattgtt-aggtaaagcccgtgttactaaa 16222874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 897487 - 897530
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgtta 237  Q
    ||||||||| ||||||||||||||||||| || |||||||||||    
T  897487 aaaaatgttcctaattaaatttagtaacaattgaacaattgtta 897530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 5911732 - 5911689
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgtta 237  Q
    |||||||||||| |||||||||||||||| || |||||||||||    
T  5911732 aaaaatgttactgattaaatttagtaacacttgaacaattgtta 5911689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 1843984 - 1844045
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttact 256  Q
    |||||||||||| ||| |||||||||||| || |||||||||| ||||||| ||| |||||||    
T  1843984 aaaaatgttactgattgaatttagtaacatttgaacaattgtt-aggtaaaccccatgttact 1844045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 39368708 - 39368603
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaaca-ttttatagtattattaata 292  Q
    ||||||||||||||||||| ||||| ||| ||| ||||||||| ||| ||| | | || |||||||   ||||||| ||| |||||||||||||| | ||    
T  39368708 aaaaatgttactaattaaaattagtcacatttatacaattgtt-aggcaaagcacatgctactaaagagcttcagttacatttttatagtattatcagta 39368610  T
Q  293 acattta 299  Q
    |||||||    
T  39368609 acattta 39368603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 16734837 - 16734925
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| |||| || |||||||||| ||||||| |||||||||||||| |  || ||| |||||||||||||    
T  16734837 aaaaatgttactaattaaatttagcaacatttgaacaattgtt-aggtaaagcccgtgttactaaagtgttttagttacattttatagta 16734925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 11936835 - 11936747
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| |||| || |||||||||| || |||| |||||||||||||| |  || ||| |||||||||||||    
T  11936835 aaaaatgttactaattaaatttagcaacacttgaacaattgtt-agataaagcccgtgttactaaagtgttttagttacattttatagta 11936747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 11948815 - 11948727
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| |||| || |||||||||| || |||| |||||||||||||| |  || ||| |||||||||||||    
T  11948815 aaaaatgttactaattaaatttagcaacacttgaacaattgtt-agataaagcccgtgttactaaagtgttttagttacattttatagta 11948727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 15361747 - 15361835
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| |||| || |||||||||| ||||||| || ||||||||||| |  || ||| |||||||||||||    
T  15361747 aaaaatgttactaattaaatttagcaacacttgaacaattgtt-aggtaaagccggtgttactaaaatgttttagttacattttatagta 15361835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 23264564 - 23264472
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    |||| |||||||||||||||||||||||| |  |||||||||| |||||||  |||||||||||||   |||||| || | |||||||||||||    
T  23264564 aaaattgttactaattaaatttagtaacattcgaacaattgtt-aggtaaaatccgtgttactaaagagcttcagcaaaactttatagtattat 23264472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 310
Target Start/End: Complemental strand, 4485632 - 4485518
Alignment:
Q  195 aaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattattaataac 294  Q
    |||||| ||||||||||||||||||| | || || ||||||| |||||||  |||||||| |||||   || ||||||| | ||||| ||||||| ||||    
T  4485632 aaaatggtactaattaaatttagtaatatttgaataattgtt-aggtaaagtccgtgttattaaatagttttagtaacaatctatagaattattagtaac 4485534  T
Q  295 atttagaaaatgttgc 310  Q
    ||| | ||||||||||    
T  4485533 attaaaaaaatgttgc 4485518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 29667983 - 29667940
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgtta 237  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  29667983 aaaaatgttactaattaaatttagtaacatttgaacaattgtta 29667940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 12591865 - 12591929
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    |||||||||| |||||||||||||||||  |  |||||||||| ||||||| ||||||||||||||    
T  12591865 aaaaatgttagtaattaaatttagtaacgctcgaacaattgtt-aggtaaagcccgtgttactaaa 12591929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 15690470 - 15690513
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgtta 237  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||    
T  15690470 aaaaatgttactaattaaatttagtgacactcaaacaattgtta 15690513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 288
Target Start/End: Complemental strand, 14669414 - 14669321
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattatt 288  Q
    |||||||||||||||||||||| | |||| |  || ||||||| |||||||  |||||||||||||    || ||| ||||||||||||||||||    
T  14669414 aaaaatgttactaattaaattttgcaacactcgaataattgtt-aggtaaagtccgtgttactaaagagttttagttacattttatagtattatt 14669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 6684126 - 6684217
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattat 287  Q
    ||||||||||||||||||||||||||||| |  ||| |||||| |||||||  || ||||||||||    || ||| |||||||||||||||||    
T  6684126 aaaaatgttactaattaaatttagtaacactcgaac-attgtt-aggtaaagtccatgttactaaagagttttagttacattttatagtattat 6684217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 6731 - 6819
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| |||| || |||||||||| ||||||| || ||||||||||| |  || ||| |||||||||||||    
T  6731 aaaaatgttactaattaaatttagcaacacttgaacaattgtt-aggtaaagccggtgttactaaaatgttttagttacattttatagta 6819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 43600299 - 43600387
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagta 283  Q
    |||||||||||||||||||||||| || | || |||||||||| ||||||| |||||||||||||| |  || ||| |||||||||||||    
T  43600299 aaaaatgttactaattaaatttagcaaaacttgaacaattgtt-aggtaaagcccgtgttactaaagtgttttagttacattttatagta 43600387  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 297
Target Start/End: Original strand, 21317441 - 21317572
Alignment:
Q  161 cactacaacaaaattgagatttagtaacattcaaaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaat 260  Q
    |||||||||| ||||||||| |||||||| |    ||||||||||||    ||||||||||| || ||||||||||| ||||||  | |||||||||||     
T  21317441 cactacaacacaattgagatctagtaacaattgtcaaatgttactaa----atttagtaacatttcaacaattgtta-ggtaaaggctgtgttactaaaa 21317535  T
Q  261 tacttcagtaacattttatagtattattaataacatt 297  Q
    | ||||| ||||||||||| ||||||  |||||||||    
T  21317536 tgcttcactaacattttattgtattaccaataacatt 21317572  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 53300383 - 53300443
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttac 255  Q
    |||||||||| ||||||||||||||||||  |||||||||||| ||||||| ||||||||||    
T  53300383 aaaaatgttagtaattaaatttagtaacacctaaacaattgtt-aggtaaagcccgtgttac 53300443  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 24559063 - 24558961
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacattttatagtattattaataa 293  Q
    ||||||||||||||||||||||||||||| || ||| |||||| ||||||   | |||||||||||  | || ||| | ||||||||||||||| | |||    
T  24559063 aaaaatgttactaattaaatttagtaacatttgaacgattgtt-aggtaacggctgtgttactaaagaattttagtgatattttatagtattatcagtaa 24558965  T
Q  294 catt 297  Q
    ||||    
T  24558964 catt 24558961  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 48464072 - 48464115
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgtta 237  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  48464072 aaaaatgttactaattaaatttagtaacatttgaacaattgtta 48464115  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 21539338 - 21539296
Alignment:
Q  195 aaaatgttactaattaaatttagtaacagttaaacaattgtta 237  Q
    ||||||||||| |||||||||||||||| ||||||||||||||    
T  21539338 aaaatgttactgattaaatttagtaacatttaaacaattgtta 21539296  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 47066102 - 47066042
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttac 255  Q
    |||||||||| ||||||||||||||||||  | |||||||||| ||||||| ||||||||||    
T  47066102 aaaaatgttagtaattaaatttagtaacacctgaacaattgtt-aggtaaagcccgtgttac 47066042  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 4904208 - 4904125
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaattacttcagtaacatttta 278  Q
    |||||||||||| |||||||||||||||| ||  ||||||||| ||||||| | | |||||||||| | ||| ||| ||||||||    
T  4904208 aaaaatgttactgattaaatttagtaacatttgtacaattgtt-aggtaaagcacttgttactaaagtgctttagttacatttta 4904125  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 1152076 - 1152140
Alignment:
Q  194 aaaaatgttactaattaaatttagtaacagttaaacaattgttaaggtaaatcccgtgttactaaa 259  Q
    |||||||||||||||||||||| | |||| | ||||||||||| || ||||  |||||||||||||    
T  1152076 aaaaatgttactaattaaattttgcaacactcaaacaattgtt-agataaagtccgtgttactaaa 1152140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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