View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16954_low_7 (Length: 310)
Name: NF16954_low_7
Description: NF16954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16954_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 46309499 - 46309203
Alignment:
| Q |
18 |
cataacacataaacacaatagattaaaatttatactaaagatatcaaacaacaactcataacacaaaatacgccttcaccgtgtagtgttgatgctacat |
117 |
Q |
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| T |
46309499 |
cataacacataaacacagtagattaaaatttatactaaagatatcaaacaacaactcatcacacaaaatacgccttcaccgtgtagtgttgatgctacat |
46309400 |
T |
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| Q |
118 |
aggtcaaataggttgtggaacaaattttcaaaaca---agaaactttaattaccacaggacataaactccataaatactaacgccatatcttgccaaaaa |
214 |
Q |
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| T |
46309399 |
aggtcaaataggttgtggaacaaattttcaaaacaagaagaaactttaattaccacaggacataaactccataaatactaaagccatatcttgccaaaaa |
46309300 |
T |
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| Q |
215 |
tttccaacataaacacat-aaggtgttgctatttaattacaccatacaaccatatcaacagtcacaaaataagcgtcgatccaaaaagtaaaataat |
310 |
Q |
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| T |
46309299 |
tttccaacataaacacataaaggtgttgctatttaattacaccatacaaccatatcaacggtcacaaaataagcgtcgatccaaaaagtaaaataat |
46309203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 46309204 - 46309094
Alignment:
| Q |
200 |
atatcttgccaaaaatttccaacataaacacataaggtgttgctatttaattacaccatacaaccatatcaacagtcacaaaataagcgtcgatccaaaa |
299 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
46309204 |
atatcttgccaaaagtttccaacataaacacataaggtgttgctatttaattacaccatacaaccatatcaccgttcacaaaataagcgtcgatccaaaa |
46309105 |
T |
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| Q |
300 |
agtaaaataat |
310 |
Q |
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| T |
46309104 |
agtaaaataat |
46309094 |
T |
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