View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16955_high_2 (Length: 558)
Name: NF16955_high_2
Description: NF16955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16955_high_2 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 38)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 185 - 551
Target Start/End: Original strand, 5298677 - 5299043
Alignment:
| Q |
185 |
cccattcacgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattga |
284 |
Q |
| |
|
|||||||||||| |||||||||| | |||||||| |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5298677 |
cccattcacgttgagagaattttcttcgcaagagattccccaatgcttttacagctagaggcaaccctccacacttttctacgattttcttgccaattga |
5298776 |
T |
|
| Q |
285 |
ttcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagt |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5298777 |
ttcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcacaaacatactccaacattcactcttcttcaattgcttcaaatgaagaagt |
5298876 |
T |
|
| Q |
385 |
ttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctccc |
484 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5298877 |
ttggtggacttcataactgatgctacctccttgtcacgtgtggtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctccc |
5298976 |
T |
|
| Q |
485 |
aacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagtctctg |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5298977 |
aacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagtctctg |
5299043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 536
Target Start/End: Complemental strand, 6839151 - 6838633
Alignment:
| Q |
18 |
caattcatccctgtcaaactcaaaacccttaggaaatacagagcagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6839151 |
caattcatccctgtcaaactcaaaacccctaggaaatacagaacagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctcaaa |
6839052 |
T |
|
| Q |
118 |
gccgagttaatgttactatcaccatcaccatcagctaagcgccacatgtcagcctctagtatcttttcccattcacgtttagagaattttttccgcaaga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6839051 |
gccgagttaatgttactatcaccatcaccatcagctaagcgccacatgtcagcctctagtatcttttcccattcatgtttagagaattttttccgcaaga |
6838952 |
T |
|
| Q |
218 |
ggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgcc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||| ||||| ||||| ||||||||| |||| |
|
|
| T |
6838951 |
ggttccccaatgttttcacagctaaaggcaaccctccacacttatctacaatctttttgccaattgattcaagttttgggtattcgcttgcatttttgcc |
6838852 |
T |
|
| Q |
318 |
gtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttcatgactgatgctacctccttg |
417 |
Q |
| |
|
||||||||| || | ||| | |||||||| ||||||||||||||||| ||||||| || | || || || |||| | ||||||||| | || |
|
|
| T |
6838851 |
gtgaaaagcaagtgtggaaaataaactccaactgtcactcttctccaattgtttcaaatcaaataactttgtagatttcacaattgatgctacattttta |
6838752 |
T |
|
| Q |
418 |
tcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatcca |
517 |
Q |
| |
|
|| ||||||||||||||||||||||| | |||||| | |||||||||||||||||| |||||||| |||| || | |||||||||||||||| |
|
|
| T |
6838751 |
tcgcgtgttgtcacaataatcttactcgtagaagatccttggttaaaaggaagtagtaacgtctcccaactttcctcattcagtttccagacatcatcca |
6838652 |
T |
|
| Q |
518 |
aaacaagcagatatttctt |
536 |
Q |
| |
|
|||||| ||||| ||||| |
|
|
| T |
6838651 |
caacaagtagatagttctt |
6838633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 536
Target Start/End: Original strand, 8471346 - 8471858
Alignment:
| Q |
18 |
caattcatccctgtcaaactcaaaacccttaggaaatacagagcagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
8471346 |
caattcatccctgtcaaactcaaaacccttaggaaatatagagcagtaggcaaaacagcgcttcagattagaagggaggttatggtaactcaatctcaat |
8471445 |
T |
|
| Q |
118 |
gccgagttaatgttactatcaccatcaccatcagctaagcgccacatgtcagcctctagtatcttttcccattcacgtttagagaattttttccgcaaga |
217 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||| | |
|
|
| T |
8471446 |
gccgagttaatgttactgtcac------catcagctaaccgccacatgtcagcctctagtatcttatcccattcgtgttgagaatattttttccgcaaaa |
8471539 |
T |
|
| Q |
218 |
ggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgcc |
317 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||| ||||| || || ||||||||||||||||||||||| ||||| || ||| |||| |
|
|
| T |
8471540 |
ggtttcccaatgttttcacagctaaaggcagccctccacacttatctacaatatttttgccaattgattcaagatttgggtattcgctcaattttttgcc |
8471639 |
T |
|
| Q |
318 |
gtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttcatgactgatgctacctccttg |
417 |
Q |
| |
|
||||||| | || ||| | ||||||||| ||||||||||||||||| ||||||| || | || || || |||| | | |||||||||| ||| |
|
|
| T |
8471640 |
aggaaaagcaagactggaaaataaactccaacagtcactcttctccaattgtttcaaatcaaataactttgtagatttcacaattaatgctacctctttg |
8471739 |
T |
|
| Q |
418 |
tcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatcca |
517 |
Q |
| |
|
|| ||||||||||||||||||||||| | |||||||| |||||| ||||||||||| |||||||| |||| || | |||||||||||||||| |
|
|
| T |
8471740 |
tcgcgtgttgtcacaataatcttactcgtagaagatccatggttaaagggaagtagtaacttctcccaactttcctcattcagtttccagacatcatcca |
8471839 |
T |
|
| Q |
518 |
aaacaagcagatatttctt |
536 |
Q |
| |
|
|||||| ||||| ||||| |
|
|
| T |
8471840 |
caacaagtagatagttctt |
8471858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 185 - 551
Target Start/End: Original strand, 5250115 - 5250481
Alignment:
| Q |
185 |
cccattcacgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattga |
284 |
Q |
| |
|
|||| ||||||| ||| || ||| | |||||||| || ||||| ||||| |||||||| ||||||||||||||||| ||| |||||||| ||||| || |
|
|
| T |
5250115 |
cccaatcacgttgagaaaactttcttcgcaagagatttcccaaagtttttacagctaatggcaaccctccacacttgcctataattttcttaccaataga |
5250214 |
T |
|
| Q |
285 |
ttcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagt |
384 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||||| ||||||| ||||||||||||||||||||||| || ||||| || |||| ||| |
|
|
| T |
5250215 |
ttcaagatttggatattcacttgcattccttccgtaaaaagcatgtctcacaaacatactccaacattcactctccttcaatttctctaaattaagctcc |
5250314 |
T |
|
| Q |
385 |
ttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctccc |
484 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| ||||||||| |||||||| |||||||| |||||||||| | || ||||||||||||||||||| |
|
|
| T |
5250315 |
ttggtggacttcatgatagatgccacctccttgttacgtgttgtaacaataattttacttccagtagatccatggcataagggaagtagtaagcgctccc |
5250414 |
T |
|
| Q |
485 |
aacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagtctctg |
551 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
5250415 |
aacattccacactcccattccagacatcatccaaaacaagaagatatttcttacctgttagtctctg |
5250481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 69 - 547
Target Start/End: Original strand, 5267892 - 5268364
Alignment:
| Q |
69 |
aaaacagcgtttcaaactggaagggaggttatggtaactcaatctcaaagccgagttaatgttactatcaccatcaccatcagctaagcgccacatgtca |
168 |
Q |
| |
|
||||||||| |||| | |||||||||| | ||||||||||||||||| | || ||||||||| | ||||| || | ||| |||||||| || |
|
|
| T |
5267892 |
aaaacagcgcttcagattggaagggagatgatggtaactcaatctcagtactgaattaatgttaatgtcaccttct------gataaacgccacatatct |
5267985 |
T |
|
| Q |
169 |
gcctctagtatcttttcccattcacgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacga |
268 |
Q |
| |
|
| ||| | |||||| |||||||| ||| |||||||||| | |||||||| || ||||| ||||| ||||||||||| |||||||||||||| ||||| | |
|
|
| T |
5267986 |
gtctccaatatcttaacccattcatgttgagagaattttcttcgcaagagatttcccaaagtttttacagctaaaggtaaccctccacacttatctacta |
5268085 |
T |
|
| Q |
269 |
ttttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattg |
368 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||| | || |||||||| |||| || ||||||||||||||||||||||| || || || |
|
|
| T |
5268086 |
ttttctttccaattgattcaagatttgggtattcacttgcattgcttccatgaaaagcatgtcgcacaaacatactccaacattcactctccttcagttt |
5268185 |
T |
|
| Q |
369 |
cttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaagga |
468 |
Q |
| |
|
|| |||| ||| ||||||||| |||||||| | |||||||| | ||| |||||||||||||||||| |||||||| | |||||||| | || ||| |
|
|
| T |
5268186 |
ctctaaattaaggtttttggtggagttcatgacagttgctaccttcatgttacgtgttgtcacaataattttacttccagcagatccatggaataaggga |
5268285 |
T |
|
| Q |
469 |
agtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagtc |
547 |
Q |
| |
|
|||| |||||||||||||||||| |||| || ||||||||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
5268286 |
agtaataagcgctcccaacattcttcactcccattccagacatcatccaaaaaaagcaagtatttcttgcctgttagtc |
5268364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 185 - 546
Target Start/End: Complemental strand, 4389026 - 4388659
Alignment:
| Q |
185 |
cccattcacgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattga |
284 |
Q |
| |
|
|||||||||||| |||||||||| | |||||||| || ||||| ||||| |||||||| || |||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
4389026 |
cccattcacgttgagagaattttcttcgcaagagatttcccaacgtttttacagctaatggaaaccctacacacttatctacaattttcttgccaattga |
4388927 |
T |
|
| Q |
285 |
ttcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagt |
384 |
Q |
| |
|
| ||||||||||||| ||||||||||| | ||||||||||| ||||||| |||||| |||||||||||||| | | || || || |||| ||| |
|
|
| T |
4388926 |
tacaagatttggatactcacttgcattccttccgtgaaaagcatgtctcacaaacattctccaacattcactttcattcagtttctctaaattaagctcc |
4388827 |
T |
|
| Q |
385 |
ttggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatctt------acttccggtagatccattgttaaaaggaagtagtaagc |
478 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||| |||||||||| | | ||||||||||||| |
|
|
| T |
4388826 |
ttggtggacttcatgatagatgctacctccttgtcacgagttgtcacaataattttacttccacttccagtagatccatggcataggggaagtagtaagc |
4388727 |
T |
|
| Q |
479 |
gctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcctgttagt |
546 |
Q |
| |
|
||||||||| |||| || | || |||||||||||||| |||||||||| ||||||||| || |||||| |
|
|
| T |
4388726 |
gctcccaaccttcctcattcccattccagacatcatctaaaacaagcaaatatttcttaccagttagt |
4388659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 211 - 497
Target Start/End: Original strand, 5280653 - 5280939
Alignment:
| Q |
211 |
cgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcat |
310 |
Q |
| |
|
|||||||| ||||| |||| ||||| |||||||||| |||||||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5280653 |
cgcaagagattccctaatgatttcagagctaaaggcggccctccacacttgtttacaattttcttcccaattgattcaagatttggatattcacttgcat |
5280752 |
T |
|
| Q |
311 |
ttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttcatgactgatgctac |
410 |
Q |
| |
|
|| | ||||||||||| ||||||| ||| | | |||||| || || | |||||||||||||||||||| | || || ||| ||||| |||| |||||| |
|
|
| T |
5280753 |
tttttccgtgaaaagcatgtctcacaaataaattccaaccatcgctttcctccaattgcttcaaatgaactatttgggaggatttcattactgctgctac |
5280852 |
T |
|
| Q |
411 |
ctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcact |
497 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| | |||||||||||| |||| |
|
|
| T |
5280853 |
ctctttgtcacgtgtggtcacaataatcttacttccaaaagatccatgattaaagggaagtagtaactgttcccaacattccccact |
5280939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 186 - 526
Target Start/End: Complemental strand, 8569030 - 8568690
Alignment:
| Q |
186 |
ccattcacgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgat |
285 |
Q |
| |
|
|||||||| || ||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||| |
|
|
| T |
8569030 |
ccattcaccttgagaaaattttctttgcaagagattccccaatgttttcacagctaaaggcaaccctccacacttttctacaatcttctttccaatcgat |
8568931 |
T |
|
| Q |
286 |
tcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtt |
385 |
Q |
| |
|
|||||||||||||||||| |||| | || |||||||| ||| ||| ||| | ||||||||| || ||| |||||||||||| |||||||| | | |
|
|
| T |
8568930 |
tcaagatttggatattcaaacacattctttccttgaaaagcatgtttcacaaataaactccaacaatctttctcctccaattgctttaaatgaagttgct |
8568831 |
T |
|
| Q |
386 |
tggtggacttcatgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctccca |
485 |
Q |
| |
|
|| ||||||||| |||| || | ||||||||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
8568830 |
gctcagatttcatgactaatgcaacatgcttgtcacgtgttgtcacaataatcttacttcctgaagatccatgattaaatggaagtagtaactgctccca |
8568731 |
T |
|
| Q |
486 |
acattccgcactaccgttccagacatcatccaaaacaagca |
526 |
Q |
| |
|
| ||||| || | || ||||||| |||||| | |||||||| |
|
|
| T |
8568730 |
aaattcctcattcccattccagatatcatctagaacaagca |
8568690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 198 - 456
Target Start/End: Original strand, 6882488 - 6882746
Alignment:
| Q |
198 |
agagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttgga |
297 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
6882488 |
agagaatttttttagcaagagattccccaatgttttcagtgctaaaggcaaccccccacacttttctactattttcttgcctatcaattcaagatttgga |
6882587 |
T |
|
| Q |
298 |
tattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttca |
397 |
Q |
| |
|
|||||| | |||| | || |||||||| | ||||| ||| | ||||||| | ||||||| |||||||||||| || || | || |||||| ||| |
|
|
| T |
6882588 |
tattcaaatacattcctaccttgaaaagcatatctcacaaataaactccaagaatcactctcctccaattgctttaagtgtattagccgggtggatctca |
6882687 |
T |
|
| Q |
398 |
tgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatcca |
456 |
Q |
| |
|
||| ||||||||| ||||||||| ||||||||||||| ||||||||||| | ||||||| |
|
|
| T |
6882688 |
tgattgatgctacttccttgtcatgtgttgtcacaatcatcttacttcctgaagatcca |
6882746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 235 - 546
Target Start/End: Original strand, 8589722 - 8590036
Alignment:
| Q |
235 |
acagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctca |
334 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||||||||| |||||||||||||||||||||||| |||| | || |||||||| ||| ||| |
|
|
| T |
8589722 |
acagctaaaggcaaccctccacacttatccagtattttcttgccagttgattcaagatttggatattcacacacattctttccttgaaaagcatgtgtca |
8589821 |
T |
|
| Q |
335 |
taaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttcatgac-tgat--gctacctccttgtcacgtgttgtcac |
431 |
Q |
| |
|
||| | ||||||||| || || || |||||||| | |||| || | |||||||| || | || |||| ||||||||||| |||||||||||||| |
|
|
| T |
8589822 |
caaataaactccaacaatcgcttttgtccaattgttgtaaatcaaataacttggtggatttaagaacatgatatgctacctccttttcacgtgttgtcac |
8589921 |
T |
|
| Q |
432 |
aataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatat |
531 |
Q |
| |
|
| |||||||||||| | | |||||| |||||| ||||||||||| ||||||||||||| ||| | |||||||||| ||| || |||||||||| ||| |
|
|
| T |
8589922 |
gacaatcttacttccagaaaatccatggttaaagggaagtagtaactgctcccaacattctgcattcccgttccagatatcgtctaaaacaagcaagtat |
8590021 |
T |
|
| Q |
532 |
ttctttcctgttagt |
546 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
8590022 |
ttcttgcctgttagt |
8590036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 221 - 476
Target Start/End: Original strand, 6265698 - 6265953
Alignment:
| Q |
221 |
tccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtg |
320 |
Q |
| |
|
||||||||||||||| || |||||||||||| ||||| ||| |||| |||||||||||||| |||||||||||||||||||| |||| |||| || |
|
|
| T |
6265698 |
tccccaatgttttcagagttaaaggcaaccccccacattttgctactattttcttgccaatcaattcaagatttggatattcaaacacattcttgccttg |
6265797 |
T |
|
| Q |
321 |
aaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtca |
420 |
Q |
| |
|
|||||| | ||||| ||| | ||||||| | ||||||| |||||||||||| |||||||| ||| ||||| |||| ||| | |||||||| ||||| |
|
|
| T |
6265798 |
aaaagcatatctcacaaataaactccaagagtcactctcctccaattgctttaaatgaagtagtcgtgtggatctcataactaacgctacctcactgtca |
6265897 |
T |
|
| Q |
421 |
cgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaa |
476 |
Q |
| |
|
|||||||||| || ||||||| || | ||||||| ||||| |||||||||||| |
|
|
| T |
6265898 |
tgtgttgtcacgatcatcttacctcgagaagatccacggttaagaggaagtagtaa |
6265953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 157 - 539
Target Start/End: Original strand, 6735905 - 6736290
Alignment:
| Q |
157 |
cgccacatgtcagcctctagtatcttttcccattcacgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccac |
256 |
Q |
| |
|
|||||||| |||| ||| | |||||| ||||||| ||| ||| | |||||| ||||| || | ||||||| ||| | ||||| |||||||||||||| |
|
|
| T |
6735905 |
cgccacatatcagtctccaatatcttaatccattcatgttcagaaagttttttacgcaaaagttggcccaatgattttatagctagaggcaaccctccac |
6736004 |
T |
|
| Q |
257 |
acttttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcact |
356 |
Q |
| |
|
|||| || || |||||||| |||||||||||||||||||||||||||| || || | || ||||| || ||| ||| ||| | |||||||| | || |
|
|
| T |
6736005 |
acttctccactattttcttcccaattgattcaagatttggatattcacaaacactttttccttgaaacgcatgtgtcacaaataatctccaacaattgct |
6736104 |
T |
|
| Q |
357 |
cttctccaattgcttcaaatgaagaagtttggtggactt-----catgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtag |
451 |
Q |
| |
|
|| |||||||| | |||| || | || ||| || || |||||| ||||||||||||| |||||||||||||| ||||| |||||||| | || |
|
|
| T |
6736105 |
tttttccaattgttgtaaatcaaataattcggttgattttagaacatgac--atgctacctccttttcacgtgttgtcacgataattttacttccagaag |
6736202 |
T |
|
| Q |
452 |
atccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatccaaaacaagcagatatttctttcc |
539 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||| |||| |||| || ||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
6736203 |
atccatggttaaacggaagtagtagctgctcccaatattctacactcccattccagatatcatctaaaacaagcaagtatttctttcc |
6736290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 221 - 446
Target Start/End: Original strand, 6142293 - 6142518
Alignment:
| Q |
221 |
tccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtg |
320 |
Q |
| |
|
||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| || |||| | || | |
|
|
| T |
6142293 |
tccccaatgttttcagagctaatggcaaccccccacacttttctactattttcttgcctatcaattcaagatttggatatccaaacacattcctacctgg |
6142392 |
T |
|
| Q |
321 |
aaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtca |
420 |
Q |
| |
|
|||||| | ||||| ||| | ||||||| | | ||||| ||||||||||||||||||||| | | ||| ||||| ||||||||| ||||||||| |
|
|
| T |
6142393 |
aaaagcatatctcacaaataaactccaagagttactctcctccaattgcttcaaatgaagtatccgagcggaactcatgcttgatgctacttccttgtca |
6142492 |
T |
|
| Q |
421 |
cgtgttgtcacaataatcttacttcc |
446 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
6142493 |
tgtgttgtcacaatcatcttacttcc |
6142518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 224 - 539
Target Start/End: Complemental strand, 6554485 - 6554167
Alignment:
| Q |
224 |
ccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaa |
323 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||||| || || |||||| | ||||||| |||||||||||||||||||| || || | || ||||| |
|
|
| T |
6554485 |
ccaatgattttatagctaaaggcaaccctccacacttgtccactattttcctcccaattgtttcaagatttggatattcacacacactttttccttgaaa |
6554386 |
T |
|
| Q |
324 |
agcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggactt-----catgactgatgctacctccttgt |
418 |
Q |
| |
|
||| ||| ||| ||| | |||||||| | || || |||||||| | |||| || | |||||| || || |||||| ||||||||||||| | |
|
|
| T |
6554385 |
agcatgtgtcacaaataatctccaacaattgcttttttccaattgttgtaaatcaaataatttggttgattttagaacatgac--atgctacctcctttt |
6554288 |
T |
|
| Q |
419 |
cacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatccaa |
518 |
Q |
| |
|
||||||||||||| |||||| ||||||| | |||||||| |||||| |||||||||| |||||||| |||| |||| || ||||| | |||||| || |
|
|
| T |
6554287 |
cacgtgttgtcacgataatcatacttccagaagatccatggttaaacggaagtagtagctgctcccaatattctacactcccattccatatatcatctaa |
6554188 |
T |
|
| Q |
519 |
aacaagcagatatttctttcc |
539 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
6554187 |
aacaagcaagtatttctttcc |
6554167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 31 - 431
Target Start/End: Original strand, 6245110 - 6245504
Alignment:
| Q |
31 |
tcaaactcaaaacccttaggaaatacagagcagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctcaaagccgagttaatgt |
130 |
Q |
| |
|
||||||||| ||||||| ||||||| ||| || || |||||||| | |||| | |||||||||||||| ||||||||| ||| | | | || | ||||| |
|
|
| T |
6245110 |
tcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattggaagggaggttaaggtaactcattcttagaacggaataaatgt |
6245209 |
T |
|
| Q |
131 |
tactatcaccatcaccatcagctaagcgccacatgtcagcctctagtatcttttcccattcacgtttagagaattttttccgcaagaggttccccaatgt |
230 |
Q |
| |
|
| || |||| || |||| ||| ||||||| |||| ||||| |||||| |||||||| || ||||||| || | ||||||| |||||||||| |
|
|
| T |
6245210 |
tgctgtcac--tc----tcaggtaaacgccacaaatcagtctctaatatcttaacccattcattttcagagaatcttctttgcaagagaatccccaatgt |
6245303 |
T |
|
| Q |
231 |
tttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgt |
330 |
Q |
| |
|
||||| |||||||||| |||| ||||| |||||||| |||||| | ||||| ||||||||||||||||||||| ||| |||| | |||||| ||| |
|
|
| T |
6245304 |
tttcagagctaaaggcgaccccccacatttttctactattttcataccaatcgattcaagatttggatattcaaacatattcctgccttcaaaagcatgt |
6245403 |
T |
|
| Q |
331 |
ctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtca |
430 |
Q |
| |
|
|| | ||| | ||||||| | ||||||| |||||||||| | |||||||| | | |||| | ||||||||||||| || || || ||| ||||||||| |
|
|
| T |
6245404 |
cttacaaataaactccaagagtcactctcctccaattgccttaaatgaagtatctgggtgtatctcatgactgatgcaacttctttatcatgtgttgtca |
6245503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 31 - 303
Target Start/End: Original strand, 6259019 - 6259288
Alignment:
| Q |
31 |
tcaaactcaaaacccttaggaaatacagagcagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctcaaagccgagttaatgt |
130 |
Q |
| |
|
||||||||| ||||||| ||||||| ||| || || |||||||| | |||| | ||||||||||| || ||||||||| ||||||||| || | ||||| |
|
|
| T |
6259019 |
tcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattggaagggaggctaaggtaactcattctcaaagcggaataaatgt |
6259118 |
T |
|
| Q |
131 |
tactatcaccatcaccatcagctaagcgccacatgtcagcctctagtatcttttcccattcacgtttagagaattttttccgcaagaggttccccaatgt |
230 |
Q |
| |
|
| || | ||||| | | ||| ||||||| |||| ||| | |||||| |||||||| || |||||| ||| | ||||||| |||||||||| |
|
|
| T |
6259119 |
tgctgttg---tcacccttgggtaaacgccacaaatcagtctccaatatcttaacccattcattttcagagaactttctttgcaagagaatccccaatgt |
6259215 |
T |
|
| Q |
231 |
tttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattca |
303 |
Q |
| |
|
||||| |||| |||||||||| ||||| |||||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
6259216 |
tttcagagctgaaggcaaccccccacatttttctactattttcttgccgatcgattcaagatttggatattca |
6259288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 404 - 539
Target Start/End: Original strand, 6947434 - 6947569
Alignment:
| Q |
404 |
atgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgtt |
503 |
Q |
| |
|
||||| ||||||| ||||| |||||||| |||||||||||||| | |||||||| |||||| ||||| ||||| ||||||||||||| ||| ||||| |
|
|
| T |
6947434 |
atgctgcctccttttcacgagttgtcacgataatcttacttccagaagatccatggttaaagggaagaagtaacagctcccaacattctgcatccccgtt |
6947533 |
T |
|
| Q |
504 |
ccagacatcatccaaaacaagcagatatttctttcc |
539 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
6947534 |
ccagatatcatctaaaacaagcaagtatttctttcc |
6947569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 404 - 546
Target Start/End: Complemental strand, 6448646 - 6448504
Alignment:
| Q |
404 |
atgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgtt |
503 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||| ||||| |||| ||||||||| ||| ||| | ||||| |
|
|
| T |
6448646 |
atgctacctccttttcacgtgttgtcacaataatcttacttccagaagatccatggttaaacggaagcagtacctgctcccaacgttctgcattcccgtt |
6448547 |
T |
|
| Q |
504 |
ccagacatcatccaaaacaagcagatatttctttcctgttagt |
546 |
Q |
| |
|
||||| || || |||||||| | |||||||||| ||||||| |
|
|
| T |
6448546 |
ccagatgtcgtctaaaacaagaaagtatttctttcttgttagt |
6448504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 213 - 442
Target Start/End: Original strand, 6900087 - 6900316
Alignment:
| Q |
213 |
caagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcattt |
312 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||| ||||||||| ||| |||| ||||| || |||| ||||||||||||||| | | ||| |
|
|
| T |
6900087 |
caagagattccccaatgttttcagagctaaaggcaacccttcacacttttgtactatttgtttgcctatcaattccagatttggatattcaaatactttt |
6900186 |
T |
|
| Q |
313 |
gtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttcatgactgatgctacct |
412 |
Q |
| |
|
| || |||| || ||| ||| ||| | ||||||||| ||||||| || |||||| || |||||||| |||| || || | |||| ||||||||| | |
|
|
| T |
6900187 |
cttcctagaaaggcatgtttcacaaataaactccaacaatcactctccttcaattgttttaaatgaagtagttgcgtagatcttatgattgatgctactt |
6900286 |
T |
|
| Q |
413 |
ccttgtcacgtgttgtcacaataatcttac |
442 |
Q |
| |
|
|| | ||| ||||||||||||| ||||||| |
|
|
| T |
6900287 |
ccatatcatgtgttgtcacaatcatcttac |
6900316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 198 - 494
Target Start/End: Complemental strand, 6591401 - 6591105
Alignment:
| Q |
198 |
agagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttgga |
297 |
Q |
| |
|
|||||||||||| |||| || | ||||| |||||| | ||||||||| | ||| |||||||||||||| ||||||||||| || || ||||| ||||| |
|
|
| T |
6591401 |
agagaattttttttgcaaaagttgccccattgtttttagagctaaaggaatccccccacacttttctactattttcttgcctatcaatacaagagttgga |
6591302 |
T |
|
| Q |
298 |
tattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttca |
397 |
Q |
| |
|
|||||| ||| | || ||||||| | ||||| ||| | ||||||| | ||||||| ||||||||| || |||| || || | |||||| || |
|
|
| T |
6591301 |
tattcaaacacatccctacctcgaaaagcatatctcacaaataaactccaagagtcactctcctccaattgatttaaatcaactagctgggtggatccca |
6591202 |
T |
|
| Q |
398 |
tgactgatgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgc |
494 |
Q |
| |
|
||| ||||||||| ||||||||| | |||||||| || ||||||||||| | |||||||| | |||| |||||||||| ||||||||||||||| |
|
|
| T |
6591201 |
tgattgatgctacttccttgtcatgcgttgtcaccatcatcttacttccagaagatccatggctaaacggaagtagtagcatctcccaacattccgc |
6591105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 485
Target Start/End: Complemental strand, 6722114 - 6721852
Alignment:
| Q |
223 |
cccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaa |
322 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| | | ||||||| || || |||||||||||| | ||| ||| |||| ||| |
|
|
| T |
6722114 |
cccaatgttttcagagctaaaggcaaccctccacacttttctgccactttcttgataaccgactcaagatttggaaaatcaaacaaattcctgcctcgaa |
6722015 |
T |
|
| Q |
323 |
aagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacg |
422 |
Q |
| |
|
|||| || ||| ||| || |||||| | ||||| | ||||||||| | |||||||| || |||||| |||||| ||||||||| |||||||| || |
|
|
| T |
6722014 |
aagcatgattcacaaatatcctccaagagtcactttcctccaattgatataaatgaagtagccgggtggatctcatgattgatgctacttccttgtcccg |
6721915 |
T |
|
| Q |
423 |
tgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctccca |
485 |
Q |
| |
|
||||||||| || ||||||||||| | ||||||| |||||| |||||||||| ||||||| |
|
|
| T |
6721914 |
tgttgtcacgatcatcttacttcctgaagatccacatttaaaaagaagtagtaactgctccca |
6721852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 166 - 431
Target Start/End: Original strand, 6168843 - 6169108
Alignment:
| Q |
166 |
tcagcctctagtatcttttcccattcacgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttcta |
265 |
Q |
| |
|
|||| ||||| |||||| |||||||| || ||||||| || | ||||||| ||||||||||||| | ||| |||||| |||| ||||| ||||||| |
|
|
| T |
6168843 |
tcagtctctaatatcttaacccattcattttcagagaatcttctttgcaagagaatccccaatgtttttagagcaaaaggcgaccccccacatttttcta |
6168942 |
T |
|
| Q |
266 |
cgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaa |
365 |
Q |
| |
|
| |||||| | ||||| ||||||||||||||||||||| ||| |||| | |||||| ||||| | ||| | ||||||| | ||||||| |||||| |
|
|
| T |
6168943 |
ctattttcataccaatcgattcaagatttggatattcaaacatattcctgccttcaaaagcatgtcttacaaataaactccaagagtcactctcctccaa |
6169042 |
T |
|
| Q |
366 |
ttgcttcaaatgaagaagtttggtggacttcatgactgatgctacctccttgtcacgtgttgtcac |
431 |
Q |
| |
|
|||| | |||||||| | | |||||| ||||||||||||| || || || ||| |||||||||| |
|
|
| T |
6169043 |
ttgccttaaatgaagtatctgggtggatctcatgactgatgcaacttctttatcatgtgttgtcac |
6169108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 185 - 430
Target Start/End: Original strand, 6917072 - 6917317
Alignment:
| Q |
185 |
cccattcacgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattga |
284 |
Q |
| |
|
|||| ||||||||||||||| || | |||||||| || |||| | | |||||| |||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
6917072 |
cccactcacgtttagagaatcttctacgcaagagattacccatttctgtcacagttaaaggcaaccctccacatttgtctactattttcttgccaataat |
6917171 |
T |
|
| Q |
285 |
ttcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagt |
384 |
Q |
| |
|
|||||||||||||| || ||| ||||| | | |||||||| || |||| ||| | ||||| ||| |||||| || |||||||| |||| ||| || |
|
|
| T |
6917172 |
ttcaagatttggatgttgactcgcattcctatcatgaaaagcatgactcacaaataaactcctacaaccactctcttctaattgctttaaatcaagtagc |
6917271 |
T |
|
| Q |
385 |
ttggtggacttcatgactgatgctacctccttgtcacgtgttgtca |
430 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
6917272 |
cgggtggatctcatgattgatgctacttccttgtcatatgttgtca |
6917317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 198 - 442
Target Start/End: Complemental strand, 13270601 - 13270357
Alignment:
| Q |
198 |
agagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttgga |
297 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||| |||||||||||| || ||||| |||||||| ||| || | || || ||||||||||||||| |
|
|
| T |
13270601 |
agagaattttctttgcaagagaatccccaatgttttcagagctaaaggcaaacccccacatttttctactattctcataccgatggattcaagatttgga |
13270502 |
T |
|
| Q |
298 |
tattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttca |
397 |
Q |
| |
|
|||||| ||| |||| | |||||| ||||||| ||| | ||||||| | ||||||| |||||||||| | ||||||| | | |||| ||| |
|
|
| T |
13270501 |
tattcaaacatattcctgccttcaaaagcatgtctcacaaataaactccaagagtcactctcctccaattgccttaaatgaattatccggttggatctca |
13270402 |
T |
|
| Q |
398 |
tgactgatgctacctccttgtcacgtgttgtcacaataatcttac |
442 |
Q |
| |
|
||||||||||||| || || ||| |||| ||||| |||||||||| |
|
|
| T |
13270401 |
tgactgatgctacttcattatcatgtgtcgtcacgataatcttac |
13270357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 404 - 539
Target Start/End: Complemental strand, 6479846 - 6479711
Alignment:
| Q |
404 |
atgctacctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgtt |
503 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||||||| |||||||| |||||| ||||||||||| |||||||| | || || | || || |
|
|
| T |
6479846 |
atgccacctccttttcacgtgttgtcacgataatcttacttccaaaagatccatggttaaatggaagtagtaactgctcccaatactctacattcccatt |
6479747 |
T |
|
| Q |
504 |
ccagacatcatccaaaacaagcagatatttctttcc |
539 |
Q |
| |
|
||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
6479746 |
ccagatatcatctaaaacaagcaagtatttctttcc |
6479711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 409 - 536
Target Start/End: Original strand, 8454824 - 8454951
Alignment:
| Q |
409 |
acctccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgttccaga |
508 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||| |||||||| |||||| ||||||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
8454824 |
acctccttctcacgtgttgtcacgacaatcttacttccaaaagatccatggttaaagggaagtagtaacaactcccaacgttccgcatccccgttccaga |
8454923 |
T |
|
| Q |
509 |
catcatccaaaacaagcagatatttctt |
536 |
Q |
| |
|
||| || |||||||||| ||||||||| |
|
|
| T |
8454924 |
tatcgtctaaaacaagcaaatatttctt |
8454951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 7750007 - 7750088
Alignment:
| Q |
222 |
ccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattca |
303 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||| || || || ||||||||||||||| |
|
|
| T |
7750007 |
ccccaatgtttctagagctaaaggcaaccccccacacttttctactattttcttgccgatcgactcgagatttggatattca |
7750088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 186 - 303
Target Start/End: Original strand, 8454598 - 8454715
Alignment:
| Q |
186 |
ccattcacgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgat |
285 |
Q |
| |
|
||||||| ||| ||| ||| ||||||||| || | ||||||| ||| | ||||||||||||||||||||||||||| || ||||| | |||| |||| |
|
|
| T |
8454598 |
ccattcatgttcagaaaatgttttccgcagaagttggcccaatgattttatagctaaaggcaaccctccacacttttccactatttttctaccaactgat |
8454697 |
T |
|
| Q |
286 |
tcaagatttggatattca |
303 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
8454698 |
tcaagatttggatattca |
8454715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 7587853 - 7587921
Alignment:
| Q |
220 |
ttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattca |
288 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| || ||||| || ||||||||||| |||||| |
|
|
| T |
7587853 |
ttccccaatgttttcacagctagaggcaaccctccacatttctctacaatcttcttgccaatcgattca |
7587921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 476
Target Start/End: Complemental strand, 6520210 - 6519954
Alignment:
| Q |
223 |
cccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaa |
322 |
Q |
| |
|
||||||| ||| | ||||||||||||||| |||||||| || || |||||| ||||||| | |||||| |||||||| |||| || |||| |||| |
|
|
| T |
6520210 |
cccaatgattttatagctaaaggcaacccaccacacttgtccactattttcatgccaatcgtttcaagttttggatagtcacacacacgcatgccttgaa |
6520111 |
T |
|
| Q |
323 |
aagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttcatgac-tgat--gctacctccttgtc |
419 |
Q |
| |
|
|||| ||| || ||| | ||||||||| | || || |||||||| | ||||||| | | |||||| |||| ||| |||| ||||||| ||| || |
|
|
| T |
6520110 |
aagcatgtgtctcaaataaactccaacaattgcttttgtccaattgatgtaaatgaattaactcggtggagttcaggacatgatctgctaccttcttttc |
6520011 |
T |
|
| Q |
420 |
acgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaa |
476 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||| ||||| ||||||||||| |
|
|
| T |
6520010 |
acgtgttgtcacgataatcttacttccagaagatccatggttaagcggaagtagtaa |
6519954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 6947264 - 6947325
Alignment:
| Q |
237 |
agctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggat |
298 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||| | |||||||||||||| ||||||| |
|
|
| T |
6947264 |
agctaaaggcaaccctccacacttgtccactattttcctcccaattgattcaagttttggat |
6947325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 6480016 - 6479949
Alignment:
| Q |
237 |
agctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcac |
304 |
Q |
| |
|
|||||||||||||||| ||||||| || | |||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
6480016 |
agctaaaggcaacccttcacacttgtccattattttcctgccaattgattcaagttttggatagtcac |
6479949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 6591559 - 6591475
Alignment:
| Q |
31 |
tcaaactcaaaacccttaggaaatacagagcagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctca |
115 |
Q |
| |
|
||||||||| | ||||| ||||||| ||| || || |||||||| || |||| | |||| ||||||||| ||||||||||||||| |
|
|
| T |
6591559 |
tcaaactcatagcccttgggaaatatagaacaataagcaaaacaacgcttcagattggatgggaggttaaggtaactcaatctca |
6591475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 7749825 - 7749909
Alignment:
| Q |
31 |
tcaaactcaaaacccttaggaaatacagagcagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctca |
115 |
Q |
| |
|
||||||||| | ||||| ||||||| ||| || || |||||||| || |||| | |||||||||||||| ||||| ||||||||| |
|
|
| T |
7749825 |
tcaaactcatagccctttggaaatatagaacaataagcaaaacaacgcttcagattggaagggaggttaaggtaattcaatctca |
7749909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 6448821 - 6448754
Alignment:
| Q |
237 |
agctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcac |
304 |
Q |
| |
|
|||||||||||||||||||||| | | | |||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
6448821 |
agctaaaggcaaccctccacacatgttcaatattttcctaccaattgattcaagaattggatattcac |
6448754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 8569192 - 8569094
Alignment:
| Q |
18 |
caattcatccctgtcaaactcaaaacccttaggaaatacagagcagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctcaa |
116 |
Q |
| |
|
||||||||| | ||||| ||| ||||||| ||||| | || || ||||||||||| || || | | |||||||||| |||||||||||||||||||| |
|
|
| T |
8569192 |
caattcatctttttcaaattcataacccttgggaaaaattgaacaataggcaaaacaacgcttgagattggaagggagattatggtaactcaatctcaa |
8569094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 6520386 - 6520298
Alignment:
| Q |
41 |
aacccttaggaaatacagagcagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctcaaagccgagttaatg |
129 |
Q |
| |
|
||||||| ||||| | ||| || || |||||||| || || | | |||||||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
6520386 |
aacccttgggaaaaatagaacaatatgcaaaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaatg |
6520298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 6882339 - 6882411
Alignment:
| Q |
43 |
cccttaggaaatacagagcagtaggcaaaacagcgtttcaaactggaagggaggttatggtaactcaatctca |
115 |
Q |
| |
|
||||| ||||||| ||| || || |||||||| || |||| | ||||||||||| || ||||||||||||||| |
|
|
| T |
6882339 |
cccttgggaaatatagaacaataagcaaaacaacgcttcagattggaagggaggataaggtaactcaatctca |
6882411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 185 - 358
Target Start/End: Complemental strand, 25242243 - 25242067
Alignment:
| Q |
185 |
cccattcacgtttagagaattttttccgcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgatt---ttcttgccaat |
281 |
Q |
| |
|
|||||||| ||| |||||||||| | |||||||| |||||| |||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||| |
|
|
| T |
25242243 |
cccattcatgttgagagaattttcttcgcaagagattccccgttgtttttacagctaaaggcaacgctccacacttttctactattattttcttgccaat |
25242144 |
T |
|
| Q |
282 |
tgattcaagatttggatattcacttgcatttgtgccgtgaaaagcgtgtctcataaacatactccaacattcactct |
358 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | ||||||||||| || ||| ||||| ||||||||| ||||||| |
|
|
| T |
25242143 |
tgatgcaagatttggatattcacttgcattccttccgtgaaaagcatgcctctcaaacacactccaacaatcactct |
25242067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 539
Target Start/End: Complemental strand, 7524 - 7206
Alignment:
| Q |
224 |
ccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcatttgtgccgtgaaa |
323 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||||| || || |||||||| ||||||| |||||||||||||||||||| || || | || ||||| |
|
|
| T |
7524 |
ccaatgattttatagctaaaggcaaccctccacacttgtccactattttcttcccaattgtttcaagatttggatattcacacacactttttccttgaaa |
7425 |
T |
|
| Q |
324 |
agcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggactt-----catgactgatgctacctccttgt |
418 |
Q |
| |
|
||| ||| ||| ||| | |||||||| | || || |||||||| | |||| || | |||||| || || |||||| ||||||||||||| | |
|
|
| T |
7424 |
agcatgtgtcacaaataatctccaacaattgcttttttccaattgttgtaaatcaaataatttggttgattttagaacatgac--atgctacctcctttt |
7327 |
T |
|
| Q |
419 |
cacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgttccagacatcatccaa |
518 |
Q |
| |
|
||||||||||||| ||||| |||||||| | |||||||| |||||| |||||||||| |||||||| |||| |||| || ||||| | |||||| || |
|
|
| T |
7326 |
cacgtgttgtcacgataattttacttccagaagatccatggttaaacggaagtagtagctgctcccaatattctacactcccattccatatatcatctaa |
7227 |
T |
|
| Q |
519 |
aacaagcagatatttctttcc |
539 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
7226 |
aacaagcaagtatttctttcc |
7206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 212 - 528
Target Start/End: Complemental strand, 6573354 - 6573038
Alignment:
| Q |
212 |
gcaagaggttccccaatgttttcacagctaaaggcaaccctccacacttttctacgattttcttgccaattgattcaagatttggatattcacttgcatt |
311 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| || | ||||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
6573354 |
gcaagagattccccaatgttttcacggctaaaggcaaccctccacatttgtctacaatctccttgccaatcgattcaagatttggatagtcaaacacatt |
6573255 |
T |
|
| Q |
312 |
tgtgccgtgaaaagcgtgtctcataaacatactccaacattcactcttctccaattgcttcaaatgaagaagtttggtggacttcatgactgatgctacc |
411 |
Q |
| |
|
| | || ||||||| ||| ||| ||| | ||||||||| || ||| |||||| | ||| ||| |||| | | | || |||||||| |||| || |
|
|
| T |
6573254 |
ttttcctcgaaaagcatgtttcacaaataaactccaacaatctttctcctccaaattctttaaaagaagttgatggtcagatttcatgaccaatgcaacg |
6573155 |
T |
|
| Q |
412 |
tccttgtcacgtgttgtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccgttccagacat |
511 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||| | |||||| ||| |||| ||||||||| ||||| |||| ||| || | || ||||| |||| |
|
|
| T |
6573154 |
tttttgtcacgtgttgtcacaataatcttgcttcctaaaaatccatggttgaaagaaagtagtaattgctccaaacactcctcattccctttccacacat |
6573055 |
T |
|
| Q |
512 |
catccaaaacaagcaga |
528 |
Q |
| |
|
|||| | |||||||||| |
|
|
| T |
6573054 |
catctagaacaagcaga |
6573038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University