View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16955_high_5 (Length: 367)
Name: NF16955_high_5
Description: NF16955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16955_high_5 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 45683353 - 45683002
Alignment:
| Q |
16 |
actgaagttttgaatttaatacccactatgagaagataaattcaacattacagttcaaggatgtaaaaatattatgattttcctgctaatgttattcaat |
115 |
Q |
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| T |
45683353 |
actgaagttttgaatttaatacccactatgagaagataaattcaacattacagttcaaggatgtaaaaatattatgattttcctgctaatgttattcaat |
45683254 |
T |
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| Q |
116 |
agatagtcgtatgatatccatacagactcattctgataaacaaaagaaaatttaaaggacatgaagtttaactaatcttctgtacatactgtcatcttcc |
215 |
Q |
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| T |
45683253 |
agatagtcgtatgatatccatacagactcattctgataaacaaaagaaaatttaaaggacatgaagtttaactaatcttctgtacatactgtcatcttcc |
45683154 |
T |
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| Q |
216 |
agcataggatggtaaggagtcttaggctcggtaattttttgcctcacaggcttgtttgcttcaatgttttcaatattaacttcatcccatctcacacgtc |
315 |
Q |
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| T |
45683153 |
agcataggatggtaaggagtcttaggctcggtaattttttgcctcacaggcttgtttgcttcaatgttttcaatattaacttcatcccatctcacacgtc |
45683054 |
T |
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| Q |
316 |
ccctgtaatgataaaacaaacgaaggttcataatactacaattgcttctcag |
367 |
Q |
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| T |
45683053 |
ccctgtaatgataaaacaaacgaaggttcataatactacaattgcttctcag |
45683002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 319
Target Start/End: Original strand, 97299 - 97444
Alignment:
| Q |
174 |
acatgaagtttaactaatcttctgtacatactgtcatcttccagcataggatggtaaggagtcttaggctcggtaattttttgcctcacaggcttgtttg |
273 |
Q |
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| T |
97299 |
acatgaagtttacgttatgttctttacatacagtcgtcatcaatcataggatgatatggagtcttaggctcagtaattttctgcctcacaggtttgtttg |
97398 |
T |
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| Q |
274 |
cttcaatgttttcaatattaacttcatcccatctcacacgtcccct |
319 |
Q |
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| T |
97399 |
cctcaatttctccaatgttagcctcatcccaccttacacgtcccct |
97444 |
T |
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