View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16955_low_11 (Length: 265)

Name: NF16955_low_11
Description: NF16955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16955_low_11
NF16955_low_11
[»] chr7 (6 HSPs)
chr7 (18-115)||(32734743-32734840)
chr7 (115-166)||(32733885-32733936)
chr7 (114-158)||(32735035-32735079)
chr7 (114-166)||(12139137-12139189)
chr7 (114-158)||(41237737-41237781)
chr7 (115-159)||(7202974-7203018)
[»] chr5 (2 HSPs)
chr5 (167-247)||(16999497-16999577)
chr5 (119-159)||(39149470-39149510)
[»] chr6 (2 HSPs)
chr6 (201-247)||(11762813-11762859)
chr6 (202-239)||(8490380-8490417)
[»] chr3 (5 HSPs)
chr3 (115-158)||(34825090-34825133)
chr3 (196-242)||(4573949-4573995)
chr3 (116-153)||(8427153-8427190)
chr3 (119-159)||(25025181-25025221)
chr3 (203-247)||(36015456-36015500)
[»] chr4 (3 HSPs)
chr4 (120-158)||(55010851-55010889)
chr4 (119-171)||(52869442-52869494)
chr4 (119-159)||(52870155-52870195)
[»] chr2 (2 HSPs)
chr2 (115-160)||(32602846-32602891)
chr2 (211-247)||(16319001-16319037)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 32734840 - 32734743
Alignment:
Q  18 tcatcagaatgacgttcagaggatctcaccgccgtcatctaaccaccaccacccttcttgctgttgactatgctcagagcatttcagacccgttttat 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  32734840 tcatcagaacgacgttcagaggatctcaccgccgtcatctaaccaccaccacccttctcgctgttgactatgttcagagcatttcagacccgttttat 32734743  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 32733936 - 32733885
Alignment:
Q  115 tcacctttcccatgatgggaaaggaatcaactttcccatgtgaaacctcacc 166  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  32733936 tcacattttccatgatgggaaaggaatcaactttcccatgtgaaacctcacc 32733885  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 32735035 - 32735079
Alignment:
Q  114 atcacctttcccatgatgggaaaggaatcaactttcccatgtgaa 158  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  32735035 atcacctttcccatgatgggaaaggaatcaaccttcccatgtgaa 32735079  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 12139137 - 12139189
Alignment:
Q  114 atcacctttcccatgatgggaaaggaatcaactttcccatgtgaaacctcacc 166  Q
    ||||||||||||||| ||||||| |||||||  ||||||||||||||||||||    
T  12139137 atcacctttcccatggtgggaaaagaatcaatcttcccatgtgaaacctcacc 12139189  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 41237737 - 41237781
Alignment:
Q  114 atcacctttcccatgatgggaaaggaatcaactttcccatgtgaa 158  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||    
T  41237737 atcacatttcccatgatgggaaaggaatcaaccttcccatgtgaa 41237781  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 7203018 - 7202974
Alignment:
Q  115 tcacctttcccatgatgggaaaggaatcaactttcccatgtgaaa 159  Q
    |||||||||||||| |||||||||||| ||| |||| ||||||||    
T  7203018 tcacctttcccatggtgggaaaggaattaaccttccaatgtgaaa 7202974  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 16999497 - 16999577
Alignment:
Q  167 ataaactaattgtactattaaaccatattataggcatagcctttaaaaacactgaaatttcaaaagcatgtttacactaac 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16999497 ataaactaattgtactattaaaccatattataggcatagcctttaaaaacactgaaatttcaaaagcatgtttacactaac 16999577  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 39149470 - 39149510
Alignment:
Q  119 ctttcccatgatgggaaaggaatcaactttcccatgtgaaa 159  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  39149470 ctttcccatggtgggaaaggattcacctttcccatgtgaaa 39149510  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 11762859 - 11762813
Alignment:
Q  201 catagcctttaaaaacactgaaatttcaaaagcatgtttacactaac 247  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  11762859 cataacctttaaaaacactgaaatttcaaaagaatgtttacactaac 11762813  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 8490380 - 8490417
Alignment:
Q  202 atagcctttaaaaacactgaaatttcaaaagcatgttt 239  Q
    |||||||||||||||||||||||||||| || ||||||    
T  8490380 atagcctttaaaaacactgaaatttcaatagaatgttt 8490417  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 34825133 - 34825090
Alignment:
Q  115 tcacctttcccatgatgggaaaggaatcaactttcccatgtgaa 158  Q
    ||||| |||||||||||||||||||||| || ||||||||||||    
T  34825133 tcaccattcccatgatgggaaaggaatccaccttcccatgtgaa 34825090  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 4573949 - 4573995
Alignment:
Q  196 ataggcatagcctttaaaaacactgaaatttcaaaagcatgtttaca 242  Q
    ||||||||| ||||||||||  ||||||||||||||| |||||||||    
T  4573949 ataggcataacctttaaaaaatctgaaatttcaaaagaatgtttaca 4573995  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 8427153 - 8427190
Alignment:
Q  116 cacctttcccatgatgggaaaggaatcaactttcccat 153  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  8427153 cacctttcccatgatgggaaaggattcacctttcccat 8427190  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 25025221 - 25025181
Alignment:
Q  119 ctttcccatgatgggaaaggaatcaactttcccatgtgaaa 159  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  25025221 ctttcccatgatgggaaaggattaacctttcccatgtgaaa 25025181  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 36015500 - 36015456
Alignment:
Q  203 tagcctttaaaaacactgaaatttcaaaagcatgtttacactaac 247  Q
    ||||||||||||| | |||||||||||| | ||||||||||||||    
T  36015500 tagcctttaaaaatattgaaatttcaaatgaatgtttacactaac 36015456  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 55010889 - 55010851
Alignment:
Q  120 tttcccatgatgggaaaggaatcaactttcccatgtgaa 158  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  55010889 tttcccatggtgggaaaggaatcaaccttcccatgtgaa 55010851  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 52869494 - 52869442
Alignment:
Q  119 ctttcccatgatgggaaaggaatcaactttcccatgtgaaacctcaccataaa 171  Q
    |||||||||| |||||||||| ||| ||||||||||||||  | |||||||||    
T  52869494 ctttcccatggtgggaaaggattcacctttcccatgtgaacacacaccataaa 52869442  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 52870155 - 52870195
Alignment:
Q  119 ctttcccatgatgggaaaggaatcaactttcccatgtgaaa 159  Q
    |||||||||||||| |||||| ||| |||||||||||||||    
T  52870155 ctttcccatgatggaaaaggattcacctttcccatgtgaaa 52870195  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 32602846 - 32602891
Alignment:
Q  115 tcacctttcccatgatgggaaaggaatcaactttcccatgtgaaac 160  Q
    ||||| ||||||||||| |||||||||| || ||||||||||||||    
T  32602846 tcacccttcccatgatgagaaaggaatccaccttcccatgtgaaac 32602891  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 16319001 - 16319037
Alignment:
Q  211 aaaaacactgaaatttcaaaagcatgtttacactaac 247  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  16319001 aaaaaaactgaaatttcaaaagaatgtttacactaac 16319037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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