View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16955_low_12 (Length: 250)
Name: NF16955_low_12
Description: NF16955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16955_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 33742066 - 33741837
Alignment:
| Q |
5 |
caattctttttcctgtctcttgtatgcactgtttgacgccttcaacacctaaccaaaggaagtggagattggagaaaaagatatttgaaaattgtgtttg |
104 |
Q |
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| T |
33742066 |
caattctttttcctgtctcttgtatgcactgtttgacgctttcaacacctaaccaaaggaagtggaga-------aaaagatatttgaaaattgtgtttg |
33741974 |
T |
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| Q |
105 |
caaaatgaaatatgcaaaataagctactaacatctagacaagaaagaaactactaacatgtttaaagcatgtttcacatagtccaagaacacaataggac |
204 |
Q |
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| T |
33741973 |
caaaatgaaatatgcaaaataagctactaacatctagacaagaaagaaactactaacatgtttaaagcatgtttcacatagtccaagaacacaataggac |
33741874 |
T |
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| Q |
205 |
actttgctatctttgtgctcacactgacacagtagat |
241 |
Q |
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| T |
33741873 |
actttgctatctttgtgctcacactgacacggtagat |
33741837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 33619587 - 33619529
Alignment:
| Q |
170 |
agcatgtttcacatagtccaagaacacaataggacactttgctatctttgtgctcacac |
228 |
Q |
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| T |
33619587 |
agcatgattcacacagtccaagatcaaaatagttcactttgctatctttgtgttcacac |
33619529 |
T |
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