View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16955_low_14 (Length: 237)
Name: NF16955_low_14
Description: NF16955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16955_low_14 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 55708189 - 55707969
Alignment:
| Q |
17 |
tgaagatcattcctgtcaatagcggcctgcaatattagtaggagttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcagagaa |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55708189 |
tgaagatcattcctctcaatagcggcctgcaatattagtaggagttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcagagaa |
55708090 |
T |
|
| Q |
117 |
aagcatttcttgtccacatatattttgctgaacgcctaaacaagaactggtaacacagccccaataaagaataaccatacaaggtttcgatacaatccac |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55708089 |
aagcatttcttgtcagcatatattttgctgaatgcctaaacaagaactggtaacacagccccaataaagaataaccatacaaggtttcgatacaatccac |
55707990 |
T |
|
| Q |
217 |
caggtccaaattatagccgcc |
237 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
55707989 |
cgggtccaaattatagccgcc |
55707969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 56046882 - 56046675
Alignment:
| Q |
17 |
tgaagatcattcctgtcaatagcg-gcctgcaatattagtaggagttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcagaga |
115 |
Q |
| |
|
||||||||||||| ||||||||| || |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56046882 |
tgaagatcattccggtcaatagccagcttgcaatgttagttggagttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcagagg |
56046783 |
T |
|
| Q |
116 |
aaagcatttcttgtccacatatattttgctgaacgcctaaacaagaactggtaacacagccccaataaagaataaccatacaaggtttcgatacaatcca |
215 |
Q |
| |
|
|| |||||||||| || |||||||| ||| || ||||| ||||||| ||||| || |||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
56046782 |
aatccatttcttgttagggtagattttgctaaacacccaaacaggaactggcaacactgctccaaccaagaatagccatacaaggtttcggtacaatcca |
56046683 |
T |
|
| Q |
216 |
ccaggtcc |
223 |
Q |
| |
|
|| ||||| |
|
|
| T |
56046682 |
cctggtcc |
56046675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 47295048 - 47294882
Alignment:
| Q |
54 |
gtaggagttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcagagaaaagcatttctt-gtccacatatattttgctgaacgcc |
152 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||| | ||| || |||||| | ||| ||| ||||||| |||| || |
|
|
| T |
47295048 |
gtaggagttgcacgtggcattccagcaaaactgtaagatataactggtatgtttacctgaggaatccatttcctagtcaggataaattttgccgaacacc |
47294949 |
T |
|
| Q |
153 |
taaacaagaactggtaacacagccccaataaagaataaccatacaaggtttcgatacaatccaccaggtccaaat |
227 |
Q |
| |
|
|| ||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
47294948 |
ta--------ctggtaacacagctccaatcaagaatagccatacaaggtttcaatacaatccaccgggtccaaat |
47294882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 35802448 - 35802497
Alignment:
| Q |
51 |
ttagtaggagttgcaggtggcattccagcaaaaccataagatataactgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35802448 |
ttagtaggagttgcaggtggcattccagcaaaaccataagatataactgg |
35802497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University