View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16955_low_15 (Length: 216)

Name: NF16955_low_15
Description: NF16955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16955_low_15
NF16955_low_15
[»] chr5 (2 HSPs)
chr5 (118-198)||(16999497-16999577)
chr5 (70-110)||(39149470-39149510)
[»] chr7 (6 HSPs)
chr7 (66-117)||(32733885-32733936)
chr7 (65-109)||(32735035-32735079)
chr7 (65-117)||(12139137-12139189)
chr7 (22-66)||(32734743-32734787)
chr7 (65-109)||(41237737-41237781)
chr7 (66-110)||(7202974-7203018)
[»] chr6 (2 HSPs)
chr6 (152-198)||(11762813-11762859)
chr6 (153-190)||(8490380-8490417)
[»] chr3 (5 HSPs)
chr3 (66-109)||(34825090-34825133)
chr3 (147-193)||(4573949-4573995)
chr3 (67-104)||(8427153-8427190)
chr3 (70-110)||(25025181-25025221)
chr3 (154-198)||(36015456-36015500)
[»] chr4 (3 HSPs)
chr4 (71-109)||(55010851-55010889)
chr4 (70-122)||(52869442-52869494)
chr4 (70-110)||(52870155-52870195)
[»] chr2 (2 HSPs)
chr2 (66-111)||(32602846-32602891)
chr2 (162-198)||(16319001-16319037)


Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 16999497 - 16999577
Alignment:
Q  118 ataaactaattgtactattaaaccatattataggcatagcctttaaaaacactgaaatttcaaaagcatgtttacactaac 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16999497 ataaactaattgtactattaaaccatattataggcatagcctttaaaaacactgaaatttcaaaagcatgtttacactaac 16999577  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 39149470 - 39149510
Alignment:
Q  70 ctttcccatgatgggaaaggaatcaactttcccatgtgaaa 110  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  39149470 ctttcccatggtgggaaaggattcacctttcccatgtgaaa 39149510  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 32733936 - 32733885
Alignment:
Q  66 tcacctttcccatgatgggaaaggaatcaactttcccatgtgaaacctcacc 117  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  32733936 tcacattttccatgatgggaaaggaatcaactttcccatgtgaaacctcacc 32733885  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 32735035 - 32735079
Alignment:
Q  65 atcacctttcccatgatgggaaaggaatcaactttcccatgtgaa 109  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  32735035 atcacctttcccatgatgggaaaggaatcaaccttcccatgtgaa 32735079  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 12139137 - 12139189
Alignment:
Q  65 atcacctttcccatgatgggaaaggaatcaactttcccatgtgaaacctcacc 117  Q
    ||||||||||||||| ||||||| |||||||  ||||||||||||||||||||    
T  12139137 atcacctttcccatggtgggaaaagaatcaatcttcccatgtgaaacctcacc 12139189  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 32734787 - 32734743
Alignment:
Q  22 cttcttgctgttgactatgctcagagcatttcagacccgttttat 66  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  32734787 cttctcgctgttgactatgttcagagcatttcagacccgttttat 32734743  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 41237737 - 41237781
Alignment:
Q  65 atcacctttcccatgatgggaaaggaatcaactttcccatgtgaa 109  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||    
T  41237737 atcacatttcccatgatgggaaaggaatcaaccttcccatgtgaa 41237781  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 7203018 - 7202974
Alignment:
Q  66 tcacctttcccatgatgggaaaggaatcaactttcccatgtgaaa 110  Q
    |||||||||||||| |||||||||||| ||| |||| ||||||||    
T  7203018 tcacctttcccatggtgggaaaggaattaaccttccaatgtgaaa 7202974  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 11762859 - 11762813
Alignment:
Q  152 catagcctttaaaaacactgaaatttcaaaagcatgtttacactaac 198  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  11762859 cataacctttaaaaacactgaaatttcaaaagaatgtttacactaac 11762813  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 8490380 - 8490417
Alignment:
Q  153 atagcctttaaaaacactgaaatttcaaaagcatgttt 190  Q
    |||||||||||||||||||||||||||| || ||||||    
T  8490380 atagcctttaaaaacactgaaatttcaatagaatgttt 8490417  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 34825133 - 34825090
Alignment:
Q  66 tcacctttcccatgatgggaaaggaatcaactttcccatgtgaa 109  Q
    ||||| |||||||||||||||||||||| || ||||||||||||    
T  34825133 tcaccattcccatgatgggaaaggaatccaccttcccatgtgaa 34825090  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 4573949 - 4573995
Alignment:
Q  147 ataggcatagcctttaaaaacactgaaatttcaaaagcatgtttaca 193  Q
    ||||||||| ||||||||||  ||||||||||||||| |||||||||    
T  4573949 ataggcataacctttaaaaaatctgaaatttcaaaagaatgtttaca 4573995  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 8427153 - 8427190
Alignment:
Q  67 cacctttcccatgatgggaaaggaatcaactttcccat 104  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  8427153 cacctttcccatgatgggaaaggattcacctttcccat 8427190  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 25025221 - 25025181
Alignment:
Q  70 ctttcccatgatgggaaaggaatcaactttcccatgtgaaa 110  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  25025221 ctttcccatgatgggaaaggattaacctttcccatgtgaaa 25025181  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 36015500 - 36015456
Alignment:
Q  154 tagcctttaaaaacactgaaatttcaaaagcatgtttacactaac 198  Q
    ||||||||||||| | |||||||||||| | ||||||||||||||    
T  36015500 tagcctttaaaaatattgaaatttcaaatgaatgtttacactaac 36015456  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 55010889 - 55010851
Alignment:
Q  71 tttcccatgatgggaaaggaatcaactttcccatgtgaa 109  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  55010889 tttcccatggtgggaaaggaatcaaccttcccatgtgaa 55010851  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 52869494 - 52869442
Alignment:
Q  70 ctttcccatgatgggaaaggaatcaactttcccatgtgaaacctcaccataaa 122  Q
    |||||||||| |||||||||| ||| ||||||||||||||  | |||||||||    
T  52869494 ctttcccatggtgggaaaggattcacctttcccatgtgaacacacaccataaa 52869442  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 52870155 - 52870195
Alignment:
Q  70 ctttcccatgatgggaaaggaatcaactttcccatgtgaaa 110  Q
    |||||||||||||| |||||| ||| |||||||||||||||    
T  52870155 ctttcccatgatggaaaaggattcacctttcccatgtgaaa 52870195  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 32602846 - 32602891
Alignment:
Q  66 tcacctttcccatgatgggaaaggaatcaactttcccatgtgaaac 111  Q
    ||||| ||||||||||| |||||||||| || ||||||||||||||    
T  32602846 tcacccttcccatgatgagaaaggaatccaccttcccatgtgaaac 32602891  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 16319001 - 16319037
Alignment:
Q  162 aaaaacactgaaatttcaaaagcatgtttacactaac 198  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  16319001 aaaaaaactgaaatttcaaaagaatgtttacactaac 16319037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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