View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16955_low_7 (Length: 298)

Name: NF16955_low_7
Description: NF16955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16955_low_7
NF16955_low_7
[»] chr3 (13 HSPs)
chr3 (1-286)||(6838620-6838908)
chr3 (1-286)||(8471583-8471871)
chr3 (152-285)||(8568668-8568801)
chr3 (139-281)||(5298894-5299036)
chr3 (158-281)||(8589911-8590034)
chr3 (158-224)||(6448563-6448629)
chr3 (158-223)||(6479764-6479829)
chr3 (158-222)||(6519945-6520009)
chr3 (142-229)||(5280847-5280934)
chr3 (186-276)||(8454864-8454954)
chr3 (158-223)||(6554220-6554285)
chr3 (158-223)||(6736172-6736237)
chr3 (138-222)||(6721852-6721936)
[»] chr7 (1 HSPs)
chr7 (149-261)||(6573042-6573154)
[»] scaffold0425 (1 HSPs)
scaffold0425 (158-223)||(7259-7324)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 6838908 - 6838620
Alignment:
Q  1 atctacaatattttttccaattgattcaagatttgagtattcgctcgcatctttgccgtgaaaagcaagtttggaaaataaactccaactgtcactcttc 100  Q
    ||||||||| ||||| |||||||||||||| |||| ||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6838908 atctacaatctttttgccaattgattcaagttttgggtattcgcttgcatttttgccgtgaaaagcaagtgtggaaaataaactccaactgtcactcttc 6838809  T
Q  101 tccagttgtttcaaatcaattatc---gtagatttcacagttgatgctacatttttgtcgcgtgttgtcacaataatcttactcgttgaagatccatggt 197  Q
    |||| |||||||||||||| || |   |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||    
T  6838808 tccaattgtttcaaatcaaataactttgtagatttcacaattgatgctacatttttatcgcgtgttgtcacaataatcttactcgtagaagatccttggt 6838709  T
Q  198 taaaaggaagtagtaacttctcccaactttcctcattcagtttccagacatcatccacaacaagtaaatagttcttgcctgttaatatt 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  6838708 taaaaggaagtagtaacgtctcccaactttcctcattcagtttccagacatcatccacaacaagtagatagttcttggctgttaatatt 6838620  T

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Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 8471583 - 8471871
Alignment:
Q  1 atctacaatattttttccaattgattcaagatttgagtattcgctcgcatctttgccgtgaaaagcaagtttggaaaataaactccaactgtcactcttc 100  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||   | ||||||  ||||||||||  |||||||||||||||||| ||||||||||    
T  8471583 atctacaatatttttgccaattgattcaagatttgggtattcgctcaattttttgccaggaaaagcaagactggaaaataaactccaacagtcactcttc 8471682  T
Q  101 tccagttgtttcaaatcaattatc---gtagatttcacagttgatgctacatttttgtcgcgtgttgtcacaataatcttactcgttgaagatccatggt 197  Q
    |||| |||||||||||||| || |   |||||||||||| || ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||    
T  8471683 tccaattgtttcaaatcaaataactttgtagatttcacaattaatgctacctctttgtcgcgtgttgtcacaataatcttactcgtagaagatccatggt 8471782  T
Q  198 taaaaggaagtagtaacttctcccaactttcctcattcagtttccagacatcatccacaacaagtaaatagttcttgcctgttaatatt 286  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  8471783 taaagggaagtagtaacttctcccaactttcctcattcagtttccagacatcatccacaacaagtagatagttcttgcccattaatatt 8471871  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 285
Target Start/End: Complemental strand, 8568801 - 8568668
Alignment:
Q  152 ttgtcgcgtgttgtcacaataatcttactcgttgaagatccatggttaaaaggaagtagtaacttctcccaactttcctcattcagtttccagacatcat 251  Q
    ||||| |||||||||||||||||||||||   |||||||||||| ||||| ||||||||||||| |||||||  ||||||||||   ||||||| |||||    
T  8568801 ttgtcacgtgttgtcacaataatcttacttcctgaagatccatgattaaatggaagtagtaactgctcccaaaattcctcattcccattccagatatcat 8568702  T
Q  252 ccacaacaagtaaatagttcttgcctgttaatat 285  Q
    | | |||||| ||| | || ||||||||||||||    
T  8568701 ctagaacaagcaaaaactttttgcctgttaatat 8568668  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 281
Target Start/End: Original strand, 5298894 - 5299036
Alignment:
Q  139 tgatgctacatttttgtcgcgtgttgtcacaataatcttactcgttgaagatccatggttaaaaggaagtagtaacttctcccaactttcctcattcagt 238  Q
    ||||||||| |  ||||| ||||| |||||||||||||||||    | |||||||| ||||||||||||||||||   |||||||| |||| || |        
T  5298894 tgatgctacctccttgtcacgtgtggtcacaataatcttacttccggtagatccattgttaaaaggaagtagtaagcgctcccaacattccgcactaccg 5298993  T
Q  239 ttccagacatcatccacaacaagtaaatagttcttgcctgtta 281  Q
    |||||||||||||||| |||||| | ||| ||||| |||||||    
T  5298994 ttccagacatcatccaaaacaagcagatatttctttcctgtta 5299036  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 281
Target Start/End: Original strand, 8589911 - 8590034
Alignment:
Q  158 cgtgttgtcacaataatcttactcgttgaagatccatggttaaaaggaagtagtaacttctcccaactttcctcattcagtttccagacatcatccacaa 257  Q
    ||||||||||| | |||||||||    ||| ||||||||||||| ||||||||||||| |||||||| |||  |||||   ||||||| ||| || | ||    
T  8589911 cgtgttgtcacgacaatcttacttccagaaaatccatggttaaagggaagtagtaactgctcccaacattctgcattcccgttccagatatcgtctaaaa 8590010  T
Q  258 caagtaaatagttcttgcctgtta 281  Q
    |||| || || |||||||||||||    
T  8590011 caagcaagtatttcttgcctgtta 8590034  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 6448629 - 6448563
Alignment:
Q  158 cgtgttgtcacaataatcttactcgttgaagatccatggttaaaaggaagtagtaacttctcccaac 224  Q
    |||||||||||||||||||||||    ||||||||||||||||| ||||| |||| || ||||||||    
T  6448629 cgtgttgtcacaataatcttacttccagaagatccatggttaaacggaagcagtacctgctcccaac 6448563  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 6479829 - 6479764
Alignment:
Q  158 cgtgttgtcacaataatcttactcgttgaagatccatggttaaaaggaagtagtaacttctcccaa 223  Q
    ||||||||||| |||||||||||     |||||||||||||||| ||||||||||||| |||||||    
T  6479829 cgtgttgtcacgataatcttacttccaaaagatccatggttaaatggaagtagtaactgctcccaa 6479764  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 6520009 - 6519945
Alignment:
Q  158 cgtgttgtcacaataatcttactcgttgaagatccatggttaaaaggaagtagtaacttctccca 222  Q
    ||||||||||| |||||||||||    ||||||||||||||||  |||||||||||||| |||||    
T  6520009 cgtgttgtcacgataatcttacttccagaagatccatggttaagcggaagtagtaacttatccca 6519945  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 5280847 - 5280934
Alignment:
Q  142 tgctacatttttgtcgcgtgttgtcacaataatcttactcgttgaagatccatggttaaaaggaagtagtaacttctcccaactttcc 229  Q
    |||||| | |||||| ||||| |||||||||||||||||     |||||||||| ||||| |||||||||||||  ||||||| ||||    
T  5280847 tgctacctctttgtcacgtgtggtcacaataatcttacttccaaaagatccatgattaaagggaagtagtaactgttcccaacattcc 5280934  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 276
Target Start/End: Original strand, 8454864 - 8454954
Alignment:
Q  186 aagatccatggttaaaaggaagtagtaacttctcccaactttcctcattcagtttccagacatcatccacaacaagtaaatagttcttgcc 276  Q
    |||||||||||||||| ||||||||||||  |||||||| |||| ||| |   ||||||| ||| || | |||||| ||||| ||||||||    
T  8454864 aagatccatggttaaagggaagtagtaacaactcccaacgttccgcatccccgttccagatatcgtctaaaacaagcaaatatttcttgcc 8454954  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 6554285 - 6554220
Alignment:
Q  158 cgtgttgtcacaataatcttactcgttgaagatccatggttaaaaggaagtagtaacttctcccaa 223  Q
    ||||||||||| |||||| ||||    ||||||||||||||||| |||||||||| || |||||||    
T  6554285 cgtgttgtcacgataatcatacttccagaagatccatggttaaacggaagtagtagctgctcccaa 6554220  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 6736172 - 6736237
Alignment:
Q  158 cgtgttgtcacaataatcttactcgttgaagatccatggttaaaaggaagtagtaacttctcccaa 223  Q
    ||||||||||| ||||| |||||    ||||||||||||||||| |||||||||| || |||||||    
T  6736172 cgtgttgtcacgataattttacttccagaagatccatggttaaacggaagtagtagctgctcccaa 6736237  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 6721936 - 6721852
Alignment:
Q  138 ttgatgctacatttttgtcgcgtgttgtcacaataatcttactcgttgaagatccatggttaaaaggaagtagtaacttctccca 222  Q
    |||||||||| |  ||||| ||||||||||| || ||||||||   ||||||||||   |||||| |||||||||||| ||||||    
T  6721936 ttgatgctacttccttgtcccgtgttgtcacgatcatcttacttcctgaagatccacatttaaaaagaagtagtaactgctccca 6721852  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 261
Target Start/End: Complemental strand, 6573154 - 6573042
Alignment:
Q  149 tttttgtcgcgtgttgtcacaataatcttactcgttgaagatccatggttaaaaggaagtagtaacttctcccaactttcctcattcagtttccagacat 248  Q
    |||||||| |||||||||||||||||||| ||   | || |||||||||| |||| ||||||||| | |||| |||  |||||||||  |||||| ||||    
T  6573154 tttttgtcacgtgttgtcacaataatcttgcttcctaaaaatccatggttgaaagaaagtagtaattgctccaaacactcctcattccctttccacacat 6573055  T
Q  249 catccacaacaag 261  Q
    |||| | ||||||    
T  6573054 catctagaacaag 6573042  T

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Target: scaffold0425 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 7324 - 7259
Alignment:
Q  158 cgtgttgtcacaataatcttactcgttgaagatccatggttaaaaggaagtagtaacttctcccaa 223  Q
    ||||||||||| ||||| |||||    ||||||||||||||||| |||||||||| || |||||||    
T  7324 cgtgttgtcacgataattttacttccagaagatccatggttaaacggaagtagtagctgctcccaa 7259  T

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