View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16955_low_8 (Length: 284)
Name: NF16955_low_8
Description: NF16955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16955_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 1369012 - 1368744
Alignment:
| Q |
1 |
tttggagtatctctttggccaagtcggccgaagagacaactatggttgttacttggcctagttttaaacttaatattggaccataaattttggcaagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1369012 |
tttggagtatctctttggccaagtcggccgaagagacaactatggttgttacttggcctagttttaaacttaatattggaccataaattttggcaagttt |
1368913 |
T |
|
| Q |
101 |
ggctaatgatttatgtggtttgttgttcattacaaagaggtttccaactatgggaagagggaaaggtcctggtggaagttttgagttagttttgtttctc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1368912 |
ggctaatgatttatgtggcttgttgttcattacaaagaggtttccaactatgggaagagggaaaggtcctggtggaagttttgagttagttttgtttctc |
1368813 |
T |
|
| Q |
201 |
attttggttgcaaataatgagtaaaaaacttgtgtaacaatgaatattaacaagaagataagtatataa |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1368812 |
attttggttgcaaataatgagtaaaaaacttgtgtaacaatgaatattaacaagaagataagtatataa |
1368744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 1363494 - 1363226
Alignment:
| Q |
1 |
tttggagtatctctttggccaagtcggccgaagagacaactatggttgttacttggcctagttttaaacttaatattggaccataaattttggcaagttt |
100 |
Q |
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||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
1363494 |
tttggagtatctctttggccatgtcgggcgaagagataactatggttgttacttgacctagctttaaagttaatattggaccataaattttggcaagttt |
1363395 |
T |
|
| Q |
101 |
ggctaatgatttatgtggtttgttgttcattacaaagaggtttccaactatgggaagagggaaaggtcctggtggaagttttgagttagttttgtttctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1363394 |
ggctaatgatttatgtggtttgttgttcattacaaagaggtttccaactatgggaagagggaaaggtcctggtggaagttttgagttagttttgtttctc |
1363295 |
T |
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| Q |
201 |
attttggttgcaaataatgagtaaaaaacttgtgtaacaatgaatattaacaagaagataagtatataa |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1363294 |
attttggttgcaaataatgagtaaaaaacttgtgtaacaatgaatattaacaagaacataagtatataa |
1363226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 1407930 - 1408198
Alignment:
| Q |
1 |
tttggagtatctctttggccaagtcggccgaagagacaactatggttgttacttggcctagttttaaacttaatattggaccataaattttggcaagttt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
1407930 |
tttggagtatctctttggccatgtcgggcgaagagataactatggttgttacttgacctagctttaaagttaatattggaccataaattttggcaagttt |
1408029 |
T |
|
| Q |
101 |
ggctaatgatttatgtggtttgttgttcattacaaagaggtttccaactatgggaagagggaaaggtcctggtggaagttttgagttagttttgtttctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1408030 |
ggctaatgatttatgtggtttgttgttcattacaaagagatttccaactatgggaagagggaaaggtcctggtggaagttttgagttagttttgtttctc |
1408129 |
T |
|
| Q |
201 |
attttggttgcaaataatgagtaaaaaacttgtgtaacaatgaatattaacaagaagataagtatataa |
269 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1408130 |
attttggttgcaaataatgagtaaaaaacttgtgtaacaatgaatattaacaagaagataagtatataa |
1408198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 29975278 - 29975398
Alignment:
| Q |
1 |
tttggagtatctctttggccaagtcggccgaagagacaactatggttgttacttggcctagttttaaacttaatattggaccataaattttggcaagttt |
100 |
Q |
| |
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|||||||||| |||||||||| | | ||||||||||||||||| |||| ||| |||||||||| ||| | ||||| |||||||||| || | ||| |
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| T |
29975278 |
tttggagtatttctttggccattttaggtgaagagacaactatggtggttatttgacctagttttagactcatgattggtccataaatttcagctaattt |
29975377 |
T |
|
| Q |
101 |
ggctaatgatttatgtggttt |
121 |
Q |
| |
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|||||| ||||| || ||||| |
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| T |
29975378 |
ggctaaggatttgtgaggttt |
29975398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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