View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16955_low_9 (Length: 279)
Name: NF16955_low_9
Description: NF16955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16955_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 35059751 - 35060010
Alignment:
| Q |
1 |
acgtgcatacatgcgtgacaagtagtgataccaatctccctccccattgcaatcatgtcccac---caccaccgcatccttctggtaacgtacccagctc |
97 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35059751 |
acgtgcatacatgcgtgacaagtcgtgataccaatctccc----cattgcaatcatgtcccaccaccaccaccgcatccttctggtaacgtacccagctc |
35059846 |
T |
|
| Q |
98 |
aaggccacataaacccagcccttcaatttgccaagcgactcatatcaatgggtgcacatgtcactcttcctatcaccctccacctctaccgtcgtctaat |
197 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
35059847 |
aaggccacataaacccagcccttcaatttgccaagcgactcatatcaatgggtgcacatgtcactcttcccatcaccctccacctctaccgtcgtttaat |
35059946 |
T |
|
| Q |
198 |
cctcctcaatccatccataaccaccatctccaacctctccataacccccttctccgatggctac |
261 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35059947 |
cctcctcaatccatccataaccaccatctccaacctctccataacccccttctccgatggctac |
35060010 |
T |
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