View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16956_high_1 (Length: 812)

Name: NF16956_high_1
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16956_high_1
NF16956_high_1
[»] chr4 (4 HSPs)
chr4 (8-301)||(51527554-51527856)
chr4 (540-728)||(51527131-51527319)
chr4 (356-393)||(29815096-29815133)
chr4 (356-393)||(48740567-48740604)
[»] chr3 (2 HSPs)
chr3 (356-392)||(48744307-48744343)
chr3 (356-393)||(33994704-33994741)
[»] chr1 (3 HSPs)
chr1 (356-392)||(7785298-7785334)
chr1 (356-392)||(26756024-26756060)
chr1 (356-393)||(48242614-48242651)
[»] scaffold0058 (1 HSPs)
scaffold0058 (356-393)||(14503-14540)
[»] chr8 (3 HSPs)
chr8 (356-393)||(9014750-9014787)
chr8 (356-393)||(32967300-32967337)
chr8 (356-393)||(44790445-44790482)
[»] chr7 (3 HSPs)
chr7 (356-393)||(7456607-7456644)
chr7 (356-393)||(18235237-18235274)
chr7 (356-393)||(21387503-21387540)
[»] chr6 (1 HSPs)
chr6 (356-393)||(31265826-31265863)
[»] chr2 (1 HSPs)
chr2 (355-392)||(13375211-13375248)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 51527856 - 51527554
Alignment:
Q  8 tatttataccagagttgataggacatttaatttttctaatgtttcgatctcattttggaagtagtttgtgaacacactcaccatattaatcaaggaataa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51527856 tatttataccagagttgataggacatttaatttttctaatgtttcgatctcattttggaagtagtttgtgaacacactcaccatattaatcaaggaataa 51527757  T
Q  108 gatcatcgtttctgtgctaatgtcagggttcagaaaatgttggagggaaattgaattgatgtgattgatctaataagaagaaaacgggtcggagtagatt 207  Q
    |||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||    
T  51527756 gatcatcgttgctgtggtaatgttagggttcagaaaatgttggagggaaattgaattgatgtgagtgatataataagaagaaaacggatcggagtagatt 51527657  T
Q  208 gtgatcagaatattatgggctttttaaatcactacaccgtcttttccttattgctgc---------tgctaaatgcacatccctactcccaagtccgcgc 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  51527656 gtgatcagaatattatgggctttttaaatcactacaccgtcttttccttattgctgctgctgctgctgctaaatgcacatccctactcccaagtccgcgc 51527557  T
Q  299 cca 301  Q
    |||    
T  51527556 cca 51527554  T

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Target: chr4; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 540 - 728
Target Start/End: Complemental strand, 51527319 - 51527131
Alignment:
Q  540 agtataatatatgccctagcttacacatacaataaggatacccaataaaaatgatggctatgatatgccaccatgccgtccacgcctaattaataaacaa 639  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  51527319 agtataatatataccctagcttacacatacaataaggatacccaataaaaatgatgactatgatttgccaccatgccgtccacgcctaattaataaacaa 51527220  T
Q  640 tctccttcaacagattaaattttgccaaatgctcaatctcatcaatgttattaagatcaaatctctctaatacatgaatatgtcgatcg 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  51527219 tctccttcaacagattaaattttgccaaatgctcaatctcatcaatgttattaagatcaaatctctctagtacatgaatatgtcgatcg 51527131  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 29815096 - 29815133
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtgg 393  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  29815096 gtattcatgcattctccactatcataaatctaaagtgg 29815133  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 48740604 - 48740567
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtgg 393  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  48740604 gtattggtgcattctccactatcataaatgtaaagtgg 48740567  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 48744343 - 48744307
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtg 392  Q
    ||||||||||||||||||||||||||||| |||||||    
T  48744343 gtattgatgcattctccactatcataaatgtaaagtg 48744307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 33994741 - 33994704
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtgg 393  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  33994741 gtattggtgcattctccactatcataaatgtaaagtgg 33994704  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 7785298 - 7785334
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtg 392  Q
    ||||||||||||||||||||||||||||| |||||||    
T  7785298 gtattgatgcattctccactatcataaatgtaaagtg 7785334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 26756060 - 26756024
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtg 392  Q
    ||||||||||||||||||||||||||||| |||||||    
T  26756060 gtattgatgcattctccactatcataaatataaagtg 26756024  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 48242614 - 48242651
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtgg 393  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  48242614 gtattgatgcatcctccactatcataaatgtaaagtgg 48242651  T

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Target: scaffold0058 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 14540 - 14503
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtgg 393  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  14540 gtattgatgcattctccactgtcataaatgtaaagtgg 14503  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 9014787 - 9014750
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtgg 393  Q
    |||||||||||||||||||||||||||||  |||||||    
T  9014787 gtattgatgcattctccactatcataaatgcaaagtgg 9014750  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 32967300 - 32967337
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtgg 393  Q
    |||||| | |||||||||||||||||||||||||||||    
T  32967300 gtattggtccattctccactatcataaatttaaagtgg 32967337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 44790445 - 44790482
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtgg 393  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  44790445 gtattggtgcattctccactatcataaatgtaaagtgg 44790482  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 7456607 - 7456644
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtgg 393  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  7456607 gtattgatgtattctccactatcataaatataaagtgg 7456644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 18235274 - 18235237
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtgg 393  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  18235274 gtattggtgcattctccactatcataaatgtaaagtgg 18235237  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 21387503 - 21387540
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtgg 393  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  21387503 gtattggtgcattctccactatcataaatgtaaagtgg 21387540  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 31265863 - 31265826
Alignment:
Q  356 gtattgatgcattctccactatcataaatttaaagtgg 393  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  31265863 gtattggtgcattctccactatcataaatgtaaagtgg 31265826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 13375211 - 13375248
Alignment:
Q  355 ggtattgatgcattctccactatcataaatttaaagtg 392  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  13375211 ggtattggtgcattctccactatcataaatgtaaagtg 13375248  T

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