View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16956_high_16 (Length: 308)

Name: NF16956_high_16
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16956_high_16
NF16956_high_16
[»] chr4 (1 HSPs)
chr4 (1-294)||(53702403-53702695)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 53702403 - 53702695
Alignment:
Q  1 tgtttgtatggtcatgatcataaatttaaattaaataatatagaagtgtaaaatagtatcaatttctttgttattggttataatgacacaagaatgaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53702403 tgtttgtatggtcatgatcataaatttaaattaaataatatagaagtgtaaaatagtatcaatttctttgttattggttataatgacacaagaatgaatt 53702502  T
Q  101 tgttatggtacatnnnnnnngtttaaaatttatttgagaattgagactaataatagtctataaatatacaatcaaaaataggtgcagccaacttgagttc 200  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53702503 tgttatggtacataaaaaa-gtttaaaatttatttgagaattgagactaataatagtctataaatatacaatcaataataggtgcagccaacttgagttc 53702601  T
Q  201 ctaacaaaattagatagaaattcttgtggataaattctcaaatctcaaattcagaatgtcagactcaaagaatctactgattctggtggccttt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53702602 ctaacaaaattagatagaaattcttgtggataaattctcaaatctcaaattcagaatgtcagactcaaagaatctactgattctggtggccttt 53702695  T

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