View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16956_high_17 (Length: 268)
Name: NF16956_high_17
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 30391521 - 30391769
Alignment:
| Q |
21 |
cccagcctatggttgacattacataaaagtctactaataagatctttagcctcaggcgatagcccagcttcctcaggaaatttcaagtgagatttccagt |
120 |
Q |
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| T |
30391521 |
cccagcctatggttgacattacataaaagtctactaataagatctttagcctcaggcgatagcccagcttcctcaggaaatttcaagtgagatttccagt |
30391620 |
T |
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| Q |
121 |
tcactatctgcaggaaagagataccaagataaaactatcatgctcagtaaatttgttttaaaaagaaaaattacgtctg-----------tttaaannnn |
209 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
30391621 |
tcactatctgcagtaaagagataccaagataaaactatcatgctcagtaaatttgttttaaaaagaaaaactacgtctgtttggtttctatttaaatttt |
30391720 |
T |
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| Q |
210 |
nnngtatcttgtttttacttttaattacaaaaatattaatttgtttcat |
258 |
Q |
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| T |
30391721 |
ttcgtatcttgtttttacttttaattacaaaaatattaatttgtttcat |
30391769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 39057356 - 39057245
Alignment:
| Q |
21 |
cccagcctatggttgacattacataaaagtctactaataagatctttagcctcaggcgatagcccagcttcctcaggaaatttcaagtgagatttccagt |
120 |
Q |
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|||| ||| |||||||||||||| ||||| |||| ||||||||| | ||||| || ||||||| ||||| || ||||| || |||||||| ||||||| |
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| T |
39057356 |
cccaacctttggttgacattacacaaaagcttacttataagatctgtggcctccggagatagccttgcttcttcgggaaactttaagtgagacttccagt |
39057257 |
T |
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| Q |
121 |
tcactatctgca |
132 |
Q |
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| T |
39057256 |
ttactatctgca |
39057245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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