View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16956_high_2 (Length: 620)
Name: NF16956_high_2
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 123 - 607
Target Start/End: Original strand, 14516378 - 14516850
Alignment:
| Q |
123 |
tcaatggttaataaaacaaaagagtaatagttagcattgaatgaaacccaaataaatcaactctgttactattacattccaatgaaaggaagaaggnnnn |
222 |
Q |
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| T |
14516378 |
tcaatggttaataaaacaaaagagtaatagttagcattgaatgaaacccaaataaatcaactctgttacaattccaatgaaaggaaaaaaaaaa--aaaa |
14516475 |
T |
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| Q |
223 |
nnnnctaaaatttacaccatcaccaccttcacaaagttaaaaagcatttggagaagggaagctacaataaaacccaaaactaaccaaagataacatctat |
322 |
Q |
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| T |
14516476 |
aaaactaaaatttacaccataaccaccttcacaaagttaaaaagcatttggagaagggaagctacaa----------aactaactaaagataacatctat |
14516565 |
T |
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| Q |
323 |
aacattttataacatacactatcatgtgactttgctatcctcttaattaatccaccaccacttctcaaacaataatcaatacttgaaggtactaattgac |
422 |
Q |
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| T |
14516566 |
aacattttataacatacactatcatgtgactttgctatcctcttaattaatccaccaccacttctcaaacaataatcaatacttgaaggtactaattgac |
14516665 |
T |
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| Q |
423 |
cttgtgattttccataagagttccaacacatagcttgttgcatacccctataactaagggaaggtcttaactgaatgtcagttaaatcaacgtctgtgca |
522 |
Q |
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| T |
14516666 |
cttgtgattttccataagagttccaacacatagcttgttgcattcccctataactaagggaaggtcttaactgaatgtcagttaaatcaacgtctgtgca |
14516765 |
T |
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| Q |
523 |
tgggatggaattgctgcatgctaggtggaccggctgcacagaataactgccacttatttgatcaaatttgacaccagaaattatc |
607 |
Q |
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| T |
14516766 |
tgggatggaattgctgcatgctaggtggaccggctgcagagtataactgccacttatttgatcaaatttgacaccagaaattatc |
14516850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 14516286 - 14516322
Alignment:
| Q |
19 |
tactgctcacttctctgatttcttttcggttccatac |
55 |
Q |
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| T |
14516286 |
tactgctcacttctctgatttcttttcggttccatac |
14516322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 14516347 - 14516381
Alignment:
| Q |
38 |
ttcttttcggttccatacattataattttagtcaa |
72 |
Q |
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| T |
14516347 |
ttcttttcggttccatacattataattttagtcaa |
14516381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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