View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16956_high_5 (Length: 448)
Name: NF16956_high_5
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_high_5 |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Original strand, 7784104 - 7784520
Alignment:
| Q |
14 |
aaatgaaaaacttaaatcacgctaatgaaaattgaaatactccaacttagaaaaataattaccaatctcctgttaacggatgccgactcattgagggaac |
113 |
Q |
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| T |
7784104 |
aaatgaaaaacttaaatcacactaatgaaaattgaaatactccaacttagaaaaataattaccaatctcctgttaacggatgccgactcattgagggaac |
7784203 |
T |
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| Q |
114 |
ataatgtgtaggagccagatcttggcctttatacttccttaaatcctcgtcattgcagctcagtaacctcgtaatatttccaggctgtccactcaaatga |
213 |
Q |
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| T |
7784204 |
ataatgtgtaggagccagatcttggcctttatacttccttaaatcctcgtcattgcagctcagtaacctcgtaatatttccaggctgtccactcaaatga |
7784303 |
T |
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| Q |
214 |
aaactgtgcataagtcctacagtttgccaatcaaagtatggcgtgcattccgtggagaaaactgtatggattttgggatgtggctttccatcatcacgat |
313 |
Q |
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| T |
7784304 |
aaactgtgcataagtcctacagtttgccaatcaaagtatggcgtgcattccgtggagaaaactgtatggattttgggatgtggctttcgatcatcacgat |
7784403 |
T |
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| Q |
314 |
caacgggtgtttcgacaacttcttcatccatcatttttaaagtagcaggattcacatatgttggcttagttagttcggcaaaagatttgctttttaaaaa |
413 |
Q |
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| T |
7784404 |
caacgggtgtttcgacaacttcttcatccatcatttttaaagtagcaggattcacatatgttggcttagttagttcggcaaaagatttgctttttaaaaa |
7784503 |
T |
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| Q |
414 |
gctcaagtattttgacc |
430 |
Q |
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| T |
7784504 |
gctcaagtattttgacc |
7784520 |
T |
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Target: scaffold0044 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 297
Target Start/End: Original strand, 53854 - 54083
Alignment:
| Q |
68 |
ataattaccaatctcctgttaacggatgccgactcattgagggaacataatgtgtaggagccagatcttggcctttatacttccttaaatcctcgtcatt |
167 |
Q |
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||||||||||||| |||||||| ||||| ||||||| || ||||| |||||||| ||||||| | ||||||| || | |||| ||||| || |
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| T |
53854 |
ataattaccaatcgcctgttaatggatgttgactcatagaaggaacgtaatgtgtgggagccaagttacggcctttgtatagctttaagtcctcatcgga |
53953 |
T |
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| Q |
168 |
gcagctcagtaacctcgtaatatttccaggctgtccactcaaatgaaaactgtgcataagtcctacagtttgccaatcaaagtatggcgtgcattccgtg |
267 |
Q |
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|||||| || | ||| || |||||||| ||||||||||| ||||| ||||| ||||||||||| || || |||||||||||||||| ||||||| ||| |
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| T |
53954 |
gcagctgagaagcctagtgatatttccgggctgtccacttaaatggaaactatgcataagtccgactgtctgccaatcaaagtatgagctgcattcagtg |
54053 |
T |
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| Q |
268 |
gagaaaactgtatggattttgggatgtggc |
297 |
Q |
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| T |
54054 |
gaaaaaacagtatggattttcggatatggc |
54083 |
T |
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