View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16956_low_10 (Length: 357)
Name: NF16956_low_10
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 40667903 - 40668234
Alignment:
| Q |
8 |
cgaagaatattgatttgggagcattggctaggcatactcaaggttttagtggtgcagacattacagaaatatgccagcgagcatgcaaatatgctataag |
107 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40667903 |
cgaaaaatgttgatttgggagcattggctaggcatactcaaggttttagtggtgcagacattacagaaatatgccagcgagcatgcaaatatgctataag |
40668002 |
T |
|
| Q |
108 |
agaaaacatagagaaggtatgtttttggctaatggatgtatacttcttttattccttagaactttgaaagatggaactttctgatttgatgaacttgtgc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40668003 |
agaaaacatagagaaggtatgtttttggctaatggatgtatacttcttttattccttagaactttgaaagatggaactttctgatttgatgaacttgtgc |
40668102 |
T |
|
| Q |
208 |
ttgctaatatgtatacaaatatgaaactgacttgatgaatctcttctgataatgttcgaactaatatattgttgtggttacaggacatagagcaagagag |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40668103 |
ttgctaatatatatacaaatatgaaactgacttgatgaatctcttctgataatgtttgaactaatatattgttgtggttacaggacatagagcaagagag |
40668202 |
T |
|
| Q |
308 |
gaagaggaaggaaaaccctgagggcatggatg |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40668203 |
gaagaggaaggaaaaccctgagggcatggatg |
40668234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 40722147 - 40721958
Alignment:
| Q |
8 |
cgaagaatattgatttgggagcattggctaggcatactcaaggttttagtggtgcagacattacagaaatatgccagcgagcatgcaaatatgctataag |
107 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40722147 |
cgaaaaatgttgatttgggagcattggccaggcatactcaaggttttagtggtgccgacattacagaaatatgccagcgtgcatgcaaatatgctataag |
40722048 |
T |
|
| Q |
108 |
agaaaacatagagaaggtatgtttttggctaatggatgtatacttcttttattccttagaactttgaaagatggaactttctgatttgat |
197 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40722047 |
agaaaacatagagaaggtatgcttttggctaacagatgtatacttcttttattccttagaactttgaaagattgaactttctgatttgat |
40721958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 208 - 339
Target Start/End: Complemental strand, 40721753 - 40721622
Alignment:
| Q |
208 |
ttgctaatatgtatacaaatatgaaactgacttgatgaatctcttctgataatgttcgaactaatatattgttgtggttacaggacatagagcaagagag |
307 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40721753 |
ttgctattttgtatacaaatatgaaactaactcgatgaatctcttttgataatgtttgaactaatatattgttgtggttacaggacatagagaaagagag |
40721654 |
T |
|
| Q |
308 |
gaagaggaaggaaaaccctgagggcatggatg |
339 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
40721653 |
gaagaggaaggaaaaccctgaggcgatggatg |
40721622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 27978996 - 27979079
Alignment:
| Q |
43 |
actcaaggttttagtggtgcagacattacagaaatatgccagcgagcatgcaaatatgctataagagaaaacatagagaaggta |
126 |
Q |
| |
|
|||||||| || |||||||| || ||||| || || |||||||| || ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
27978996 |
actcaaggcttcagtggtgctgatattactgagatttgccagcgtgcttgcaagtatgctataagagaaaacatcgagaaggta |
27979079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 41091394 - 41091314
Alignment:
| Q |
46 |
caaggttttagtggtgcagacattacagaaatatgccagcgagcatgcaaatatgctataagagaaaacatagagaaggta |
126 |
Q |
| |
|
||||| ||||||||||| || ||||| || || |||||||| || ||||| ||||| |||||||| ||||| ||||||||| |
|
|
| T |
41091394 |
caaggctttagtggtgctgatattactgagatttgccagcgtgcttgcaagtatgccataagagagaacattgagaaggta |
41091314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University