View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16956_low_11 (Length: 337)
Name: NF16956_low_11
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 38400709 - 38400380
Alignment:
| Q |
1 |
tttttatcgtctaaaaatgtactctttgaaaggatcggttttaagaaatcacgacaataaacaaagctcccttaaggaaatgcaatcatgtactatacaa |
100 |
Q |
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| T |
38400709 |
tttttatcgtctaaaagtgtactctttgaaaggatttgttttaagaaatcacgacaataaacaaagctcccttaaggaaatgcaatcatgtactatacaa |
38400610 |
T |
|
| Q |
101 |
tgtgtaagactgtttatttattgaaggattaatgaagcatataccatcggttcattacttcatttgtataaacattacag-nnnnnnnngctaataaagt |
199 |
Q |
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| T |
38400609 |
tgtgtaagactgtttatttattgaaggattaatgaagcatataccatcggttcattacttcattcgtataaacattacagtttttttttgctaataaagt |
38400510 |
T |
|
| Q |
200 |
gtacatattttggattgtggggaataatgtttttgcagaaaatacaaaaatgggattaagcgaaataaaggggaagtggggcaaaagatagcctttagaa |
299 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38400509 |
gtatatattttgggttgtggggaataatgtttttgcagaaaatacaaaaatgggattaagcgaaataaaggggaagcggggcaaaagatagcctttagaa |
38400410 |
T |
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| Q |
300 |
caagatcagagcttgagattattgatgatg |
329 |
Q |
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|||||||||||||||||||||| ||||||| |
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| T |
38400409 |
caagatcagagcttgagattatggatgatg |
38400380 |
T |
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