View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16956_low_12 (Length: 329)
Name: NF16956_low_12
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 1980012 - 1979687
Alignment:
| Q |
1 |
ctctccctttactcaatctttcttnnnnnnngaagccacacacacgtccaagccacaaaatccttcaccc-gtgtcaattgaagcatctccttcaaatat |
99 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
1980012 |
ctctccctctactcaatctttctttctccacgaagccacacacacgtccaagccacaaaatctgtcaccccgtgtcaattgaagcatctccttcaaatat |
1979913 |
T |
|
| Q |
100 |
tcaactaactcaaaacctaannnnnnnn-acaccgtttctaaaccctagaaattctaccccgaaatatagtagagtatctatcaacataatataaacctc |
198 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1979912 |
tcaactaactcaaaacctaatttttttttacaccgtttctaaaccctagaaattctaccccgaaatatagtagagtatctatcaacataatataaacctc |
1979813 |
T |
|
| Q |
199 |
tcccaagatgaacaccctctaggaaccaatttcccaaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1979812 |
tcccaagatgaacaccctctaggaaccaatttcccaaactagactggaataattagaattcgtttatgatgtggaatattagtctaaactgcaaccatat |
1979713 |
T |
|
| Q |
299 |
aacatactaagatttttcttatcact |
324 |
Q |
| |
|
|||| |||||||||||||||| |||| |
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|
| T |
1979712 |
aacaaactaagatttttcttaccact |
1979687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 325
Target Start/End: Complemental strand, 42266366 - 42266274
Alignment:
| Q |
233 |
caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcactc |
325 |
Q |
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|||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||| |
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| T |
42266366 |
caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccactc |
42266274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 48701675 - 48701767
Alignment:
| Q |
233 |
caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcactc |
325 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||| |
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| T |
48701675 |
caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccactc |
48701767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 30950037 - 30950129
Alignment:
| Q |
233 |
caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcactc |
325 |
Q |
| |
|
|||||||||| ||| |||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||| |
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|
| T |
30950037 |
caaactagaccggagtaataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccactc |
30950129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 9443946 - 9444038
Alignment:
| Q |
233 |
caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcactc |
325 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||| |
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|
| T |
9443946 |
caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccactc |
9444038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 27878563 - 27878655
Alignment:
| Q |
233 |
caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcactc |
325 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||| |
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|
| T |
27878563 |
caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccactc |
27878655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 325
Target Start/End: Complemental strand, 41718873 - 41718781
Alignment:
| Q |
233 |
caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcactc |
325 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||| |
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| T |
41718873 |
caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccactc |
41718781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 5823129 - 5823221
Alignment:
| Q |
233 |
caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcactc |
325 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| ||||| |
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|
| T |
5823129 |
caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccactc |
5823221 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 2817117 - 2817203
Alignment:
| Q |
233 |
caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttctta |
319 |
Q |
| |
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|||||||||| |||||||| ||||||| ||| |||| ||||| || ||| ||||| |||||| ||| ||||||||||||||||||| |
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| T |
2817117 |
caaactagaccggaataataagaattcttttctgatgtggaagatcagtttaaaccacaaccacatagcatactaagatttttctta |
2817203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 325
Target Start/End: Complemental strand, 25441222 - 25441130
Alignment:
| Q |
233 |
caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcactc |
325 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||||||| || || || ||| || || ||||||| | | ||||||||||||||||||| ||||| |
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| T |
25441222 |
caaactagacaggaataataagaattcttttatgatgtgaaagatcagtttacaccgcaaccacagagcatactaagatttttcttaccactc |
25441130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 8138338 - 8138413
Alignment:
| Q |
253 |
agaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcactcgac |
328 |
Q |
| |
|
||||||| |||||||| ||||| | ||||||||| |||||| ||| ||||||||||||||||||| |||||||| |
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|
| T |
8138338 |
agaattcttttatgatgtggaagttcagtctaaaccacaaccaaatagcatactaagatttttcttaccactcgac |
8138413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 825942 - 825851
Alignment:
| Q |
233 |
caaactagactggaataattagaattcgtttatgatttggaatattagtctaaactgcaaccatataacatactaagatttttcttatcact |
324 |
Q |
| |
|
|||||||||| |||| ||| ||||||| ||| |||| ||||| || ||| ||||| ||||||| | | ||||||||||||||||||| |||| |
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|
| T |
825942 |
caaactagaccggaacaataagaattcttttctgatgtggaagatcagtttaaaccgcaaccacagagcatactaagatttttcttaccact |
825851 |
T |
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