View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16956_low_13 (Length: 321)
Name: NF16956_low_13
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 124 - 305
Target Start/End: Original strand, 45760626 - 45760807
Alignment:
| Q |
124 |
gctatatcaaacacaaactaaaatgaacttacaaataaaactaaaatgaacaacaagttgcgcttatattttattaagtggggtgtctcacctacttaca |
223 |
Q |
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| T |
45760626 |
gctatatcaaacacaaactaaaatgaacttacaaataaaactaaaatgaacaacaagttgcgcttatattttattaagtggggtatctcacctacttaca |
45760725 |
T |
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| Q |
224 |
ttagtaatatgctagatagtgcccaaaataattgtatttgcttattatgtagtaaagaatgaagaaaaaggtagtcaaaaat |
305 |
Q |
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| T |
45760726 |
ttagtaatatgctagatagtgcccaaaataattgtaattgcatattatgtagtaaagaatgaagaaaaaggtagtcaaaaat |
45760807 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 45760515 - 45760558
Alignment:
| Q |
13 |
aaaatctctcatctcccttcctatttttcaaaccaaacagaccc |
56 |
Q |
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| T |
45760515 |
aaaatctctcatctcccttcctattttataaaccaaacaaaccc |
45760558 |
T |
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