View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16956_low_14 (Length: 317)
Name: NF16956_low_14
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 32497616 - 32497752
Alignment:
| Q |
164 |
atttgagaaaagggtccggtaatctaaagtttggttgtgaggtaagtaaatgttaggttaaaaatcatttccaac-aaaatcgttctcgagtcttatttc |
262 |
Q |
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| T |
32497616 |
atttgagaaaagggtctcgtaatctaaagtttggttgtgaggtaggtaaatgttaggtcaaaaatcatttccatcaaaaatcgttctcgagtcttatctt |
32497715 |
T |
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| Q |
263 |
ttcaatttaattcctaaattatttaaagggtgttatc |
299 |
Q |
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| T |
32497716 |
ttcaatttaattcctaaattatttaaagggtgttatc |
32497752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 32497502 - 32497563
Alignment:
| Q |
104 |
gagaatatattaaattgattaaaaatgtattcaaaataggaaaaatacttaaataggtttat |
165 |
Q |
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| T |
32497502 |
gagaatatattaaattgattaaaaatgtattcaaaataggaaaaatacttaaatgggtttat |
32497563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 32497378 - 32497489
Alignment:
| Q |
15 |
cataggataa-ggaagtattttaaattaaatatattaaaatgattttgttttgactgagaatatcttaaannnnnnnnnnnnngaagcaagagaatatat |
113 |
Q |
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| T |
32497378 |
cataggataaaggaagtattttaaattaaatatattaaaatgattttcttttgactgagaatatattaaattttttttttt--gaagcaagagaatatat |
32497475 |
T |
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| Q |
114 |
taaattgattaaaa |
127 |
Q |
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| T |
32497476 |
taaattgattaaaa |
32497489 |
T |
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