View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16956_low_15 (Length: 317)
Name: NF16956_low_15
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 2622751 - 2623052
Alignment:
| Q |
1 |
tattttcgaagattttctcattatgggctgaaagtcctcgaaggttaggcggtttgaactttggaactaatgatgtcggtaatattcttgcagtatcagg |
100 |
Q |
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| T |
2622751 |
tatttttgaagattttctcattatgggctgaaagtcctcgaaggttaggcggtttgaactttggaactaatgatgtcggtaatattcttgcagtatcagg |
2622850 |
T |
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| Q |
101 |
tacatcttggacatttatgaatctttagatgtttattaagattaggaacagtccttccttcctaaccctttatctccaaggaatgatagcacttgcacat |
200 |
Q |
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| T |
2622851 |
tacatcttggacatttatgaatctttagatatttattaagattaggaacagtccttccttcctaaccctttatctccaaggaatgatagcacttgcacat |
2622950 |
T |
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| Q |
201 |
aaacttgtacgggttgacatgacgctatttggttgcttgcttgttcaatgaatcaaaaatggattttatgcagacataatctgaatacacttgaaccata |
300 |
Q |
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| T |
2622951 |
aaacttgtacgggttgacatgacgctatttggttgcttgcttgttcaatgaatcaaaaatggattttatgcagacataatctgaatacacttgaaccata |
2623050 |
T |
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| Q |
301 |
tt |
302 |
Q |
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|| |
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| T |
2623051 |
tt |
2623052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 39162154 - 39162246
Alignment:
| Q |
13 |
ttttctcattatgggctgaaagtcctcgaaggttaggcggtttgaactttggaactaatgatgtcggtaatattcttgcagtatcaggtacat |
105 |
Q |
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| T |
39162154 |
ttttctctttatgggccgtcagtccccgaaggttaggtggtttgaactttacaactaatgatgttggcaatgttcttgcaatatcaagtacat |
39162246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 2608644 - 2608737
Alignment:
| Q |
15 |
ttctcattatgggctgaaagtcctcgaaggttaggcggtttgaactttggaactaatgatgtcggtaatattcttgcagtatcaggtacatctt |
108 |
Q |
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|||||||||||||| | |||||| ||||||| || ||||||||||| |||| | |||| ||| || |||||||| ||||||||||||||| |
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| T |
2608644 |
ttctcattatgggcggttagtcctagaaggttgggtggtttgaacttcacaactgaaaatgttggtgatgttcttgcaatatcaggtacatctt |
2608737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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