View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16956_low_17 (Length: 301)
Name: NF16956_low_17
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 26267086 - 26266812
Alignment:
| Q |
13 |
aatatcctcaatttctcactcaaaaagaatattaatattgtgaagtggtcataattacctcaaagatttccttccctaataaattcgaaacatttacgac |
112 |
Q |
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| T |
26267086 |
aatatcctcaatttctcactcaaaaataatattaatattgtgaagtgttcataattacctcaaagatttccttccctgataaattcaaaacatttacgac |
26266987 |
T |
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| Q |
113 |
caacttggttacgatggttcaacctcacttgcatggaaagtaataagtataattat---caacaagtaagtcatggctttgaaattagtacgttgaaagc |
209 |
Q |
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| T |
26266986 |
caacttggttacgatggttcaacctcacttgcatggaaagtaataagtataattatcagcaacaagtaagtcatggctttgaaattagtacgttgaaagc |
26266887 |
T |
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| Q |
210 |
aatgcaattagtataaatcttggtttattttttaagtagaaactttggtttgttattaacatagactgactacttat |
286 |
Q |
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| T |
26266886 |
aatgtgattagtataaatcttggtt--ttttttaagcagaaactttggtttgttattaacatagactgattacttat |
26266812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 34 - 286
Target Start/End: Complemental strand, 23581568 - 23581308
Alignment:
| Q |
34 |
aaaaagaatattaatattgtgaagtggtcataat-tacctcaaagatttccttccctaataaattcgaaacatttacgaccaacttggttac----gatg |
128 |
Q |
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| T |
23581568 |
aaaaagaatattaatattttgatgtgttcataacatacctgaaagatttccttccctgataaattcgaaacattcacaaccaacttggtttcttgcgatg |
23581469 |
T |
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| Q |
129 |
gttcaacctcacttgcatggaaagtaataagtataattatcaa---caagtaagtcatggctttgaaattagtacgttgaaagcaatgcaattagtataa |
225 |
Q |
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| T |
23581468 |
gttgaacctcacttgcatggaaagtaataagtataattatcaataacaagtaagtcatgcctttgaacttagtacgttgaaagcaatgtgattagtgtaa |
23581369 |
T |
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| Q |
226 |
atcttggtttattttttaagtagaaactttggtttgttattaacatagactgactacttat |
286 |
Q |
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| | |||||| || |||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
23581368 |
accatggttttttatttaagcagaaactttggtttgttattaacatagagtgactacttat |
23581308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 127 - 286
Target Start/End: Original strand, 23583735 - 23583902
Alignment:
| Q |
127 |
tggttcaacctcacttgcat-----ggaaagtaataagtataattatcaacaag---taagtcatggctttgaaattagtacgttgaaagcaatgcaatt |
218 |
Q |
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| T |
23583735 |
tggttcaacctcacttgcataaaatgaaaagtaataagtataattatcaacaagaagtaagtcatggttttgaaattagtacgttgaaagcaatgtgatt |
23583834 |
T |
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| Q |
219 |
agtataaatcttggtttattttttaagtagaaactttggtttgttattaacatagactgactacttat |
286 |
Q |
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| T |
23583835 |
agtataaaccttggtttttttttttaacagaaactttggtttgttattaacatagactgactacttat |
23583902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 127 - 286
Target Start/End: Original strand, 23598558 - 23598725
Alignment:
| Q |
127 |
tggttcaacctcacttgcat-----ggaaagtaataagtataattatcaacaag---taagtcatggctttgaaattagtacgttgaaagcaatgcaatt |
218 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
23598558 |
tggttcaacctcacttgcataaaatgaaaagtaataagtataattatcaaaaagaagtaagtcatggttttgaaattagtacgttgaaagcaatgtgatt |
23598657 |
T |
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| Q |
219 |
agtataaatcttggtttattttttaagtagaaactttggtttgttattaacatagactgactacttat |
286 |
Q |
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| T |
23598658 |
agtataaaccttggtttttttttttaacagaaactttggtttgttattaacatagactgactacttat |
23598725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 127 - 286
Target Start/End: Original strand, 23575110 - 23575276
Alignment:
| Q |
127 |
tggttcaacctcacttgcatggaa-----agtaataagtataattatcaacaag---taagtcatggctttgaaattagtacgttgaaagcaatgcaatt |
218 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
23575110 |
tggttcaacctcacttgcatgaaatgaaaagtaataagtataattatcaataagaagtaagtcatggttttgaaattagtacgttgaaagcaatgtgatt |
23575209 |
T |
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| Q |
219 |
agtataaatcttggtttattttttaagtagaaactttggtttgttattaacatagactgactacttat |
286 |
Q |
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|||||||| |||||||| |||||||| | |||||||||||| ||||||||||||||||||||||||| |
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| T |
23575210 |
agtataaaccttggttttttttttaa-caaaaactttggtttcttattaacatagactgactacttat |
23575276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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