View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16956_low_21 (Length: 263)
Name: NF16956_low_21
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 53618262 - 53618009
Alignment:
| Q |
1 |
atgaagatgacaatagctgagtgtggactcattagagtatctccggagcaagtagattagagaacaatgtttgatgttattaagttacttttactgggcc |
100 |
Q |
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| T |
53618262 |
atgaagatgacaatagctgagtgtggactcattagagtatctccggagcaagtagattagagaacaatgtttgatgttattaagttacttttactgggcc |
53618163 |
T |
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| Q |
101 |
ccaagttttcacatgtgatttaagaacattcacctatgtttactccaatacaaaaataatacttgcgttctaatgtaccttaaagggtcccacagtttac |
200 |
Q |
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| T |
53618162 |
ccaagttttcacatgtgatttaagaacattcacctatgtttactccaatacaaaaataatatttgcgttctaatgtaccttaaagggtcccacagtttac |
53618063 |
T |
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| Q |
201 |
cactatttgtcttatgaacatgtcctagtat---agaaactctacttacatatt |
251 |
Q |
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| T |
53618062 |
cactatttgtcttatgaacatgtcctagtatagaagaaactctacttacatatt |
53618009 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 14344796 - 14344716
Alignment:
| Q |
62 |
gaacaatgtttgatgttattaagttacttttactgggccccaagttttcacatgtgatttaagaacattcacctatgttta |
142 |
Q |
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| T |
14344796 |
gaacaatgctttatgttcttgagttacttttagtgggccccaagtttccatgtgttatttaagaacattcacctattttta |
14344716 |
T |
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