View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16956_low_23 (Length: 249)
Name: NF16956_low_23
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 10416703 - 10416467
Alignment:
| Q |
4 |
agtggtgatattcccgatcaaacatttggctatttagatggtttaatatttcttgaattatacaataattccttgtccggtcccattccttcagagtttg |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10416703 |
agtggtgatattcccgatcaaacatttggctatttagatggtttaatatttcttgaattagccaataattccttgtccggtcccattccttcagagtttg |
10416604 |
T |
|
| Q |
104 |
gtaatttgaagcaactttcacatttgtatctaggcttgaataagttgtctggtgaaattcctaaggaactagcttcttgcttaacattgacagaactttg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10416603 |
gtaatttgaagcaactttcacatttgtatctaggcttgaataagttgtctggtgaaattcctaaggaactagcttcttgcttaacattgacagaactttg |
10416504 |
T |
|
| Q |
204 |
gttgggggaaaacttctttcatggagctatacctttg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10416503 |
gttgggggaaaacttctttcatggagctatacctttg |
10416467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10410993 - 10410754
Alignment:
| Q |
1 |
ttgagtggtgatattcccgatcaaacatttggctatttagatggtttaatatttcttgaattatacaataattccttgtccggtcccattccttcagagt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |||| ||| ||||||||||||| ||||||||||||||||||||| |
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|
| T |
10410993 |
ttgagtggtgatattcccaatcaaacatttggctatctagatggtttaatatatattgacttagccaataattccttgaccggtcccattccttcagagt |
10410894 |
T |
|
| Q |
101 |
ttggtaatttgaagcaactttcacatttgtatctaggcttgaataagttgtctggtgaaattcctaaggaactagcttcttgcttaacattgacagaact |
200 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||| ||||||||| ||||| |||||||||||||| | |||| |||||| || ||||||||||| |
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|
| T |
10410893 |
ttggtaacttgaagcatctttcagcgttgtatctaaacttgaataaattgtcaggtgaaattcctaaatatttagcctcttgcctagatttgacagaact |
10410794 |
T |
|
| Q |
201 |
ttggttgggggaaaacttctttcatggagctatacctttg |
240 |
Q |
| |
|
||| |||| ||||||||| | ||||||||||||||| |
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|
| T |
10410793 |
atggctgggtataaacttcttctacggagctatacctttg |
10410754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35375577 - 35375816
Alignment:
| Q |
1 |
ttgagtggtgatattcccgatcaaacatttggctatttagatggtttaatatttcttgaattatacaataattccttgtccggtcccattccttcagagt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||| |
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|
| T |
35375577 |
ttgagtggtgatattcccaatcaaacatttggctatctagatggtttaatatatcttggcttagccaataattccttgaccggtcccattccttcagagt |
35375676 |
T |
|
| Q |
101 |
ttggtaatttgaagcaactttcacatttgtatctaggcttgaataagttgtctggtgaaattcctaaggaactagcttcttgcttaacattgacagaact |
200 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| |
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|
| T |
35375677 |
ttggtaacttgaaacaactttcacaattgtatctaggcttaaataagttgtctggtgaaattcctagggaactagcttcttgcttggcattgacagtact |
35375776 |
T |
|
| Q |
201 |
ttggttgggggaaaacttctttcatggagctatacctttg |
240 |
Q |
| |
|
| | ||||||| |||||||||||||||| |||||||||| |
|
|
| T |
35375777 |
tggattggggggaaacttctttcatggaagtatacctttg |
35375816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35405763 - 35406002
Alignment:
| Q |
1 |
ttgagtggtgatattcccgatcaaacatttggctatttagatggtttaatatttcttgaattatacaataattccttgtccggtcccattccttcagagt |
100 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||| ||| || | ||||||||||||||| | || |||| || |||||| | ||||||||||||||||| | |
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|
| T |
35405763 |
ttgagtggtcatatgcccaatcaaacatttggatatctaaagggtttaatatttctttacttgaacaacaactccttgacaggtcccattccttcagatt |
35405862 |
T |
|
| Q |
101 |
ttggtaatttgaagcaactttcacatttgtatctaggcttgaataagttgtctggtgaaattcctaaggaactagcttcttgcttaacattgacagaact |
200 |
Q |
| |
|
||||||| |||||||||||||| |||||| ||||| | |||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||| |||| |
|
|
| T |
35405863 |
ttggtaacttgaagcaactttctcatttgaatctaagtttgaataagttgtcaggtgaaattccaaaggatttagcttcttgcctagaattgacaaaact |
35405962 |
T |
|
| Q |
201 |
ttggttgggggaaaacttctttcatggagctatacctttg |
240 |
Q |
| |
|
| ||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
35405963 |
tgagttggggagaaacttcttccatggagctatacctttg |
35406002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 35436202 - 35436305
Alignment:
| Q |
19 |
gatcaaacatttggctatttagatggtttaatatttcttgaattatacaataattccttgtccggtcccattccttcagagtttggtaatttgaagcaac |
118 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| |||||| || | ||| || |||||| ||||||||||||||||||| |||||||| |||||||| | |
|
|
| T |
35436202 |
gatcaaacatttggctatctagaaagtttaataaatcttgacttgtccaacaactccttgaccggtcccattccttcagaatttggtaacttgaagcatc |
35436301 |
T |
|
| Q |
119 |
tttc |
122 |
Q |
| |
|
|||| |
|
|
| T |
35436302 |
tttc |
35436305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35753988 - 35754225
Alignment:
| Q |
1 |
ttgagtggtgatattcccgatcaaacatttggctatttagatggtttaatatttcttgaattatacaataattccttgtccggtcccattccttcagagt |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| |||| || |||||| |||||| || | ||| || | |||| | ||| | ||||||| |||| |
|
|
| T |
35753988 |
ttgagtggtgatgttccaaatcaaacatttggctatctagaaggcttaataaatcttgacttgtccaacaacttcttgactggtttccttccttcggagt |
35754087 |
T |
|
| Q |
101 |
ttggtaatttgaagcaactttcacat-ttgtatctaggcttgaataagttgtctggtgaaattcctaaggaactagcttcttgcttaacattgacagaac |
199 |
Q |
| |
|
|||| || ||||||| ||||| ||| ||| ||||| || || | ||| |||||||||||||| ||||| || | ||||||||| || || ||||| | |
|
|
| T |
35754088 |
ttggcaacatgaagcatctttc-catattgaatctatactcaaacaggttttctggtgaaattccaaaggagcttgtttcttgcttgaccttaacagagc |
35754186 |
T |
|
| Q |
200 |
tttggttgggggaaaacttctttcatggagctatacctt |
238 |
Q |
| |
|
||| ||||| ||||||||| || ||||||| |||||||| |
|
|
| T |
35754187 |
ttttgttggaggaaaactttttccatggagatatacctt |
35754225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30634464 - 30634703
Alignment:
| Q |
1 |
ttgagtggtgatattcccgatcaaacatttggctatttagatggtttaatatttcttgaattatacaataattccttgtccggtcccattccttcagagt |
100 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||| |||||| ||||||||||||||| || | || || | |||| |||| |||||||||||||||| |
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|
| T |
30634464 |
ttgagtggtgatatactcaatcaaacatttggctatctagatgctttaatatttcttgacttgtctaacaacttcttgaccggccccattccttcagagt |
30634563 |
T |
|
| Q |
101 |
ttggtaatttgaagcaactttcacatttgtatctaggcttgaataagttgtctggtgaaattcctaaggaactagcttcttgcttaacattgacagaact |
200 |
Q |
| |
|
||||||| |||||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
30634564 |
ttggtaacttgaagcaactttctcaattgaatctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcatagcattgacagaact |
30634663 |
T |
|
| Q |
201 |
ttggttgggggaaaacttctttcatggagctatacctttg |
240 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
30634664 |
ttggttgggaggaaacttcttccatggagctatacctttg |
30634703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30662193 - 30662432
Alignment:
| Q |
1 |
ttgagtggtgatattcccgatcaaacatttggctatttagatggtttaatatttcttgaattatacaataattccttgtccggtcccattccttcagagt |
100 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||| |||||| |||| ||| |||||| || | ||| || | |||| |||| |||||||||||||||| |
|
|
| T |
30662193 |
ttgagtggtgatatactcaatcaaacatttggctatctagatgctttactatatcttgacttgtccaacaacttcttgaccggccccattccttcagagt |
30662292 |
T |
|
| Q |
101 |
ttggtaatttgaagcaactttcacatttgtatctaggcttgaataagttgtctggtgaaattcctaaggaactagcttcttgcttaacattgacagaact |
200 |
Q |
| |
|
||||||| |||||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
30662293 |
ttggtaacttgaagcaactttctcaattgaatctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcatagcattgacagaact |
30662392 |
T |
|
| Q |
201 |
ttggttgggggaaaacttctttcatggagctatacctttg |
240 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
30662393 |
ttggttgggaggaaacttcttccatggagctatacctttg |
30662432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30670873 - 30671112
Alignment:
| Q |
1 |
ttgagtggtgatattcccgatcaaacatttggctatttagatggtttaatatttcttgaattatacaataattccttgtccggtcccattccttcagagt |
100 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||| |||||| |||||||||| |||| || | || || | ||| |||| |||||||||||||| | |
|
|
| T |
30670873 |
ttgagtggtgatatactcaatcaaacatttggctatctagatgctttaatattttttgacttgtctaacaacttattgaccggccccattccttcagaat |
30670972 |
T |
|
| Q |
101 |
ttggtaatttgaagcaactttcacatttgtatctaggcttgaataagttgtctggtgaaattcctaaggaactagcttcttgcttaacattgacagaact |
200 |
Q |
| |
|
||||||| |||||||||||||| || ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
30670973 |
ttggtaacttgaagcaactttctcaattggatctaagcttgaataagttgtctggtgaaattcctaaggatttagcttcttgcatagcattgacagaact |
30671072 |
T |
|
| Q |
201 |
ttggttgggggaaaacttctttcatggagctatacctttg |
240 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
30671073 |
ttggttgggaggaaacttcttccatggagctatacctttg |
30671112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 238
Target Start/End: Complemental strand, 29624096 - 29623903
Alignment:
| Q |
45 |
tttaatatttcttgaattatacaataattccttgtccggtcccattccttcagagtttggtaatttgaagcaactttcacatttgtatctaggcttgaat |
144 |
Q |
| |
|
||||||||||||| | || |||| || ||||| |||||||||||||||| ||||| ||||| || | ||||||||||| |||| ||||| || |||| |
|
|
| T |
29624096 |
tttaatatttcttcacttggacaacaactccttcaccggtcccattccttctgagttcggtaaattaatgcaactttcacgattgtctctagactcgaat |
29623997 |
T |
|
| Q |
145 |
aagttgtctggtgaaattcctaaggaactagcttcttgcttaacattgacagaactttggttgggggaaaacttctttcatggagctatacctt |
238 |
Q |
| |
|
||||| |||||||||||||| ||| | ||||||||||||||| |||||||||||||| |||||||| ||||||||| |||||| |||||||| |
|
|
| T |
29623996 |
aagttttctggtgaaattcccaagaatctagcttcttgcttatcattgacagaacttaggttggggagaaacttcttgcatggaagtatacctt |
29623903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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