View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16956_low_24 (Length: 247)
Name: NF16956_low_24
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2622756 - 2622520
Alignment:
| Q |
1 |
aaaataaaatgtagaataagataatagatgcacaggttgatgaatggtagaatagaaaacagaaacatctttaagtaggaataataatacctctgcaaaa |
100 |
Q |
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| T |
2622756 |
aaaataaaatgtagaataagataatagatgcacaggttgatgaatggtagaatagaaaacagaaacatctttaagtaggaataataatacctctgcaaaa |
2622657 |
T |
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| Q |
101 |
gcaacgtcatgaatcgcgaaaacacaataaacaataatagatgacattaagggccaattttttaggaggctttcatctttttggatcgtcttatttttct |
200 |
Q |
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| T |
2622656 |
gcaacgtcatgaatcgcgaaaacacaataaacaataatagatgacattaagggccaattttttaggaggctttcatctttttggatcgtcttatttttct |
2622557 |
T |
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| Q |
201 |
catcctcgttagttccattttctaaagcttcaatttt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2622556 |
catcctcgttagttccattttctaaagcttcaatttt |
2622520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 2608291 - 2608230
Alignment:
| Q |
125 |
caataaacaataatagatgacattaagggccaattttttaggaggctttcatctttttggat |
186 |
Q |
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||||| |||| ||||||||||||||||||||| ||| | |||| |||||||||||||||| |
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| T |
2608291 |
caatacacaacaatagatgacattaagggccagtttaggaagaggttttcatctttttggat |
2608230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 39161948 - 39161876
Alignment:
| Q |
128 |
taaacaataatagatgacattaagggccaattttttaggaggctttcatctttttggatcgtcttatttttct |
200 |
Q |
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| T |
39161948 |
taaacaataatagatgacatgaaaggccaatttagaaataggctttcatctttttcaatcatcttatctttct |
39161876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 26369141 - 26369202
Alignment:
| Q |
125 |
caataaacaataatagatgacattaagggccaattttttaggaggctttcatctttttggat |
186 |
Q |
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||||| |||| ||||||||||||||||||||| ||| | |||| |||||||||||||||| |
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| T |
26369141 |
caatacacaacaatagatgacattaagggccagtttaggaagaggttttcatctttttggat |
26369202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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