View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16956_low_3 (Length: 529)

Name: NF16956_low_3
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16956_low_3
NF16956_low_3
[»] chr8 (5 HSPs)
chr8 (40-512)||(41291391-41291859)
chr8 (137-206)||(13521753-13521822)
chr8 (137-206)||(13611288-13611357)
chr8 (142-206)||(28626690-28626754)
chr8 (142-206)||(29912134-29912198)
[»] chr4 (2 HSPs)
chr4 (142-211)||(42098911-42098980)
chr4 (142-206)||(54639734-54639798)
[»] scaffold0004 (1 HSPs)
scaffold0004 (279-339)||(380813-380872)
[»] chr5 (1 HSPs)
chr5 (142-185)||(41360940-41360983)
[»] chr3 (2 HSPs)
chr3 (265-344)||(44437990-44438068)
chr3 (284-346)||(36232791-36232852)
[»] chr7 (2 HSPs)
chr7 (142-188)||(43638971-43639017)
chr7 (281-346)||(45546736-45546800)
[»] chr2 (5 HSPs)
chr2 (142-216)||(37426573-37426647)
chr2 (137-206)||(11730604-11730673)
chr2 (142-206)||(11074554-11074618)
chr2 (142-206)||(37744014-37744078)
chr2 (153-205)||(39632584-39632636)
[»] chr6 (1 HSPs)
chr6 (143-212)||(30326663-30326732)


Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 40 - 512
Target Start/End: Original strand, 41291391 - 41291859
Alignment:
Q  40 accaaatattgagatataatatttttaattatagtgtcatgttaataaggatttaaaaataaaaataattggtaattttaatgtnnnnnnnnnnnnntta 139  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||    
T  41291391 accaaagattgagatataatatttttaattatagtgtcatgttaataaggatttaaaaataaaaataattggtaattttaatgtaaaaaaaaa----tta 41291486  T
Q  140 tattttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttattaaatgtcctgctattgttaacatttatcttaa 239  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  41291487 ttttttgatgtttcaatatgttgaatatacaaatctccatataaaatttatactttaaacttcttattaagtgccctgccattgttaacatttatcttaa 41291586  T
Q  240 ggtaaatggtaactaatgttccaaacattagttaactagacaaatatagtaagaatttcttaaaaacttgtgtaatcaagtattaaaaaatgtagaaaat 339  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41291587 ggtaaatggtaactaatgtttcaaacattagttaactagacaaatatagtaagaatttctt-aaaacttgtgtaatcaagtattaaaaaatgtagaaaat 41291685  T
Q  340 attgtctatgatataaaacttatc-tttttgtttctttaaccggtgttttggaagtgcctgttaatgaaaacttacaagagaaaaatggtttagcatcac 438  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| | |||||||||||||||||| ||||||||||||| |||||||    
T  41291686 attgtctacgatataaaacttatcttttttgtttctttaaccggtgtcttggaagtgtccgttaatgaaaacttacaaaagaaaaatggttttgcatcac 41291785  T
Q  439 tccttccgtccttcttccgatcgtctctgaactgaatctcagacattgatcctgtaattaatgaaagctgcttc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41291786 tccttccgtccttcttccgatcgtctctgaactgaatctcagacattgatcctgtaattaatgaaagctgcttc 41291859  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 13521753 - 13521822
Alignment:
Q  137 ttatattttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 206  Q
    |||| |||| |||||||||| | | ||||| |||||| || | ||||||||| |||||||||||||||||    
T  13521753 ttattttttaatgtttcaatgtgtagaatacacaaatttcaaaataaaatttctactttaaacttcttat 13521822  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 13611288 - 13611357
Alignment:
Q  137 ttatattttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 206  Q
    |||| |||| |||||||||| | | ||||| |||||| || | ||||||||| |||||||||||||||||    
T  13611288 ttattttttaatgtttcaatgtgtagaatacacaaatttcaaaataaaatttctactttaaacttcttat 13611357  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 28626690 - 28626754
Alignment:
Q  142 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 206  Q
    ||||||||||||||| ||||||| | | |||| || | ||||| ||| |||||||||||||||||    
T  28626690 ttttgatgtttcaatgtattgaagacataaatttcaagataaattttttactttaaacttcttat 28626754  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 29912198 - 29912134
Alignment:
Q  142 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 206  Q
    |||||||||||||||   ||||||| |||||| |  | ||||||||| |||||||||||||||||    
T  29912198 ttttgatgtttcaatgagttgaatacacaaattttaagataaaatttctactttaaacttcttat 29912134  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 42098980 - 42098911
Alignment:
Q  142 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttattaaat 211  Q
    |||||||||||||||||||||||||||||||||   | |||||||||  | |||||||||||||| ||||    
T  42098980 ttttgatgtttcaatatattgaatatacaaatcctaaaataaaattttcattttaaacttcttatcaaat 42098911  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 54639734 - 54639798
Alignment:
Q  142 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 206  Q
    ||||||||||||||| | || |||| ||||||| | | ||||||||| |||||||||||||||||    
T  54639734 ttttgatgtttcaatttgttcaatacacaaatcccaaaataaaatttctactttaaacttcttat 54639798  T

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Target: scaffold0004 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 380813 - 380872
Alignment:
Q  279 acaaatatagtaagaatttcttaaaaacttgtgtaatcaagtattaaaaaatgtagaaaat 339  Q
    ||||||||||||| ||||||||||||  |||||||||||| |||| |||||||||||||||    
T  380813 acaaatatagtaataatttcttaaaat-ttgtgtaatcaaatatttaaaaatgtagaaaat 380872  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 41360940 - 41360983
Alignment:
Q  142 ttttgatgtttcaatatattgaatatacaaatctccatataaaa 185  Q
    ||||||||||||||||| || |||||||||||||| ||||||||    
T  41360940 ttttgatgtttcaatatgttaaatatacaaatctcaatataaaa 41360983  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 44438068 - 44437990
Alignment:
Q  265 cattagttaactagacaaatatagtaagaatttcttaaaaacttgtgtaatcaagtattaaaaaatgtagaaaatattgt 344  Q
    ||||||||||  | |||| |||||||||||||||||  || ||||||||||||| |||| |||| |||||||||| ||||    
T  44438068 cattagttaaggaaacaagtatagtaagaatttcttggaa-cttgtgtaatcaaatatttaaaagtgtagaaaatgttgt 44437990  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 36232791 - 36232852
Alignment:
Q  284 tatagtaagaatttcttaaaaacttgtgtaatcaagtattaaaaaatgtagaaaatattgtct 346  Q
    |||| |||||||||||||||| ||||| |||||||||||| |||| | |||||||| ||||||    
T  36232791 tataataagaatttcttaaaa-cttgtttaatcaagtatttaaaagtatagaaaatgttgtct 36232852  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 43639017 - 43638971
Alignment:
Q  142 ttttgatgtttcaatatattgaatatacaaatctccatataaaattt 188  Q
    |||| |||||||||||||||||||| ||||||||| | |||||||||    
T  43639017 tttttatgtttcaatatattgaatacacaaatctcaaaataaaattt 43638971  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 45546736 - 45546800
Alignment:
Q  281 aaatatagtaagaatttcttaaaaacttgtgtaatcaagtattaaaaaatgtagaaaatattgtct 346  Q
    ||||||||||||||||||||  || |||| |||||||  |||| |||| |||||||||||||||||    
T  45546736 aaatatagtaagaatttcttggaa-cttgcgtaatcagatattgaaaagtgtagaaaatattgtct 45546800  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 37426573 - 37426647
Alignment:
Q  142 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttattaaatgtcct 216  Q
    ||||||| ||||||| | ||||||| ||||||| | |  |||||||| || |||||||||||||| |||||||||    
T  37426573 ttttgatatttcaatgtgttgaatacacaaatcccaaagtaaaatttctattttaaacttcttatcaaatgtcct 37426647  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 11730604 - 11730673
Alignment:
Q  137 ttatattttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 206  Q
    |||| |||| |||||||||||| ||||||| | ||||||| ||||||||| |  ||||||||||| ||||    
T  11730604 ttatttttttatgtttcaatatgttgaatacataaatctcaatataaaatgttcactttaaactttttat 11730673  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 11074554 - 11074618
Alignment:
Q  142 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 206  Q
    |||| |||||||||| | ||||||| ||||||| | | | ||||||| |||||||||||||||||    
T  11074554 tttttatgtttcaatgtgttgaatacacaaatcccaagaaaaaatttctactttaaacttcttat 11074618  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 37744078 - 37744014
Alignment:
Q  142 ttttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttat 206  Q
    ||||||||||| ||||||||||||| | |||| |  | ||||||||| || ||||||||||||||    
T  37744078 ttttgatgttttaatatattgaatacataaattttaagataaaatttttattttaaacttcttat 37744014  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 39632584 - 39632636
Alignment:
Q  153 caatatattgaatatacaaatctccatataaaatttatactttaaacttctta 205  Q
    ||||||||||| ||||||| | |  | ||||||||||||||||||||||||||    
T  39632584 caatatattgattatacaatttttaagataaaatttatactttaaacttctta 39632636  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 30326732 - 30326663
Alignment:
Q  143 tttgatgtttcaatatattgaatatacaaatctccatataaaatttatactttaaacttcttattaaatg 212  Q
    |||||||||||||| | ||||||| ||||||| | | |||||||||  | |||||||||||||| |||||    
T  30326732 tttgatgtttcaatgtgttgaatacacaaatcccaagataaaatttccattttaaacttcttatcaaatg 30326663  T

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