View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16956_low_4 (Length: 484)

Name: NF16956_low_4
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16956_low_4
NF16956_low_4
[»] chr1 (2 HSPs)
chr1 (1-469)||(45922919-45923387)
chr1 (270-321)||(45922293-45922344)
[»] chr5 (1 HSPs)
chr5 (386-469)||(32547670-32547753)
[»] chr7 (8 HSPs)
chr7 (266-321)||(42607137-42607192)
chr7 (269-321)||(44541047-44541099)
chr7 (266-321)||(40257636-40257691)
chr7 (266-321)||(6730095-6730150)
chr7 (274-321)||(6729462-6729509)
chr7 (211-258)||(36845203-36845250)
chr7 (266-313)||(40257747-40257794)
chr7 (274-321)||(42607750-42607797)
[»] chr8 (2 HSPs)
chr8 (266-321)||(35943132-35943187)
chr8 (274-321)||(35943776-35943823)
[»] chr4 (1 HSPs)
chr4 (386-469)||(9552576-9552659)
[»] chr2 (2 HSPs)
chr2 (210-258)||(28030249-28030297)
chr2 (207-239)||(38739880-38739912)


Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 45923387 - 45922919
Alignment:
Q  1 gtgttgataagtcgctttaaaactgttgaggcatatgaatatggttaacaggttaagacaatttgtgagtctcttttgaactggtcacaggagactcata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  45923387 gtgttgataagtcgctttaaaactgttgaggcatatgaatatggttaacaggttaagacaatttgtgagtctcttttgaactggtcacaggagactca-- 45923290  T
Q  101 aaaatgatacaagattttcagtacaaacaatgcgaagcatccctgggaaaaaattatcgaccaaccaaagggatattccacacaatctttcaaaaatcga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45923289 aaaatgatacaagattttcagtacaaacaatgcgaagcatccctggtaaaaaattatcgaccaaccaaagggatattccacacaatctttcaaaaatcga 45923190  T
Q  201 tttcaattggggtgaggtttagcatgggatagggaaattatttttcatcatggaaaag-nnnnnnngtccattagatcaaacaagaaacacaatcttatc 299  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||        ||||||||||||||||||||||||||||||||||    
T  45923189 tttcaattggggtgaggtttagcatgggatagggaaattgttttccaccatggaaaagttttttttgtccattagatcaaacaagaaacacaatcttatc 45923090  T
Q  300 atggtctatcaacacttgattannnnnnngctttatcttccactacatttctcttctctctccaccataaaagctgaaatcccttttctatagctgaagt 399  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45923089 atggtctatcaacacttgattatttttttgctttatcttccactacatttctcttctctctccaccataaaagcttaaatcccttttctatagctgaagt 45922990  T
Q  400 tgttaaatcca-ttttttattatcatgctggaatttgtctaagtttgatcatgctactagcatttgttact 469  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45922989 tgttaaatccatttttttattatcgtgctggaatttgtctaagtttgatcatgctactagcatttgttact 45922919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 45922293 - 45922344
Alignment:
Q  270 attagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45922293 attagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 45922344  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 469
Target Start/End: Complemental strand, 32547753 - 32547670
Alignment:
Q  386 tctatagctgaagttgttaaatccattttttattatcatgctggaatttgtctaagtttgatcatgctactagcatttgttact 469  Q
    ||||||||||||  | |||||||| |||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||    
T  32547753 tctatagctgaaagtattaaatcccttttttattatcttgctcgaatttgtctaagtttggtcatgctgctagcatttgttact 32547670  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 42607137 - 42607192
Alignment:
Q  266 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 321  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  42607137 gtccattagatcaaatgagaaacacaatcttatcatgatctatcaacacttgatta 42607192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 44541047 - 44541099
Alignment:
Q  269 cattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 321  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  44541047 cattagatcaaataagaaacacaatcttatcatggcctatcaacacttaatta 44541099  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 40257636 - 40257691
Alignment:
Q  266 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 321  Q
    |||||||||||||||  ||||||||| |||||||||| ||||||||||||||||||    
T  40257636 gtccattagatcaaatgagaaacacattcttatcatgatctatcaacacttgatta 40257691  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 6730150 - 6730095
Alignment:
Q  266 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 321  Q
    ||||||| |||||||  |||||||||||||||||||||||||| |||| |||||||    
T  6730150 gtccattggatcaaatgagaaacacaatcttatcatggtctataaacatttgatta 6730095  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 6729462 - 6729509
Alignment:
Q  274 gatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 321  Q
    |||||||  |||||||||||||||||||||| ||||||||||| ||||    
T  6729462 gatcaaatgagaaacacaatcttatcatggtttatcaacacttaatta 6729509  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 36845250 - 36845203
Alignment:
Q  211 ggtgaggtttagcatgggatagggaaattatttttcatcatggaaaag 258  Q
    ||||||||||||||||||| |||| |||| ||| ||||||||||||||    
T  36845250 ggtgaggtttagcatgggaaaggggaattgtttctcatcatggaaaag 36845203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 40257794 - 40257747
Alignment:
Q  266 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaaca 313  Q
    |||||||||||||||  ||||||||| |||||||||| ||||||||||    
T  40257794 gtccattagatcaaatgagaaacacattcttatcatgatctatcaaca 40257747  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 42607797 - 42607750
Alignment:
Q  274 gatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 321  Q
    |||||||  |||||||||||||||||||  ||||||||||||||||||    
T  42607797 gatcaaatgagaaacacaatcttatcataatctatcaacacttgatta 42607750  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 35943132 - 35943187
Alignment:
Q  266 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 321  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||||||||||||    
T  35943132 gtccattgaatcaaatgagaaacacaatcttatcatggtctatcaacacttgatta 35943187  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 35943823 - 35943776
Alignment:
Q  274 gatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 321  Q
    |||||||  |||||||||||||||||||||| ||||||||||| ||||    
T  35943823 gatcaaatgagaaacacaatcttatcatggtttatcaacacttaatta 35943776  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 469
Target Start/End: Complemental strand, 9552659 - 9552576
Alignment:
Q  386 tctatagctgaagttgttaaatccattttttattatcatgctggaatttgtctaagtttgatcatgctactagcatttgttact 469  Q
    ||||||| ||||| |||| ||||| ||||||| |||  || | ||||||||||||||||| ||||||| ||| |||||||||||    
T  9552659 tctatagttgaaggtgtttaatcccttttttaatatattggtcgaatttgtctaagtttggtcatgctgctaccatttgttact 9552576  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 28030249 - 28030297
Alignment:
Q  210 gggtgaggtttagcatgggatagggaaattatttttcatcatggaaaag 258  Q
    |||||||||||||||||||| ||| ||| |||||||||| |||| ||||    
T  28030249 gggtgaggtttagcatgggaaaggaaaaatatttttcatgatgggaaag 28030297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 38739912 - 38739880
Alignment:
Q  207 ttggggtgaggtttagcatgggatagggaaatt 239  Q
    ||||||||||||||||||||||| |||||||||    
T  38739912 ttggggtgaggtttagcatgggaaagggaaatt 38739880  T

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