View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16956_low_9 (Length: 385)
Name: NF16956_low_9
Description: NF16956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16956_low_9 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 12533269 - 12533645
Alignment:
| Q |
1 |
aagtagctgtctttagtatatcaaggatttttgcaataatggtaagtgcattgagcaaaaaacatcagcatttactacttctgttctatagggcaccatt |
100 |
Q |
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| T |
12533269 |
aagtagctgtctttactatatcaaggatttttgcaataatgataagtgcattgagcaaaaaacatcatcatttactacttctgttctatagggcaccatt |
12533368 |
T |
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| Q |
101 |
catgggtgcatatctgcttaaactatttgtttaattcagtttgcagcttatctgcaacaactttacaaaatggctcatattaatctatgatgcataaaaa |
200 |
Q |
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| T |
12533369 |
catgggtgcacatctgcttaaactccttgtttaattcagtttgcagcttgtctgcaacaactttacaaaatggctcatattaatctatgatgcataaaaa |
12533468 |
T |
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| Q |
201 |
tgaatggtcctgtttgttaatgcagttcacttctgaaagcatcttgtgttaagccttaaccct--aaaacttgctggtagattttagaaggtaataagga |
298 |
Q |
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||||||||| |||| ||||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12533469 |
tgaatggtcatgttcgttaatgcaattaacttctgaaagcatcttgtgctaagccttaaccctaaaaaacttgctggtagattttagaaggtaataagga |
12533568 |
T |
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| Q |
299 |
ttttcagagtaattggattaatgggaggggtgtcaaaatcaatttccacaatataaaaaattgtgaatgaatgttat |
375 |
Q |
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| T |
12533569 |
ttttcagagtaattggattaatgggaggggtgtcaaaatcaatttccacaatataaaaaattgtgaatgaatgttat |
12533645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 12534257 - 12534633
Alignment:
| Q |
1 |
aagtagctgtctttagtatatcaaggatttttgcaataatggtaagtgcattgagcaaaaaacatcagcatttactacttctgttctatagggcaccatt |
100 |
Q |
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| T |
12534257 |
aagtagctgtctttaatatatcaaggatttttgcaataatgataagtgcattgagcaaaaaacatcatcatttactacttctgttctatagggcaccatt |
12534356 |
T |
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| Q |
101 |
catgggtgcatatctgcttaaactatttgtttaattcagtttgcagcttatctgcaacaactttacaaaatggctcatattaatctatgatgcataaaaa |
200 |
Q |
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| T |
12534357 |
catgggtgcacatctgcttaaactccttgtttaattcagtttgcagcttgtctgcaacaactttacaaaatggctcatattaatctatgatgcataaaaa |
12534456 |
T |
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| Q |
201 |
tgaatggtcctgtttgttaatgcagttcacttctgaaagcatcttgtgttaagccttaaccct--aaaacttgctggtagattttagaaggtaataagga |
298 |
Q |
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| T |
12534457 |
tgaatggtcatgttcgttaatgcaattaacttctgaaagcatcttgtgctaagccttaaccctaaaaaacttgctggtagattttagaaggtaataagga |
12534556 |
T |
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| Q |
299 |
ttttcagagtaattggattaatgggaggggtgtcaaaatcaatttccacaatataaaaaattgtgaatgaatgttat |
375 |
Q |
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| T |
12534557 |
ttttcagagtaattggattaatgggaggggtgtcaaaatcaatttccacaatataaaaaattgtgaatgaatgttat |
12534633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 30196 - 29822
Alignment:
| Q |
1 |
aagtagctgtctttagtatatcaaggatttttgcaataatggtaagtgcattgagcaaaaaacatcagcatttactacttctgttctatagggcaccatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30196 |
aagtagctgtctttagtatatcaaggatttttgcaataatgataagtgcattgagcaaaaaacat--gcatttactacttctgttctatagggcaccatt |
30099 |
T |
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| Q |
101 |
catgggtgcatatctgcttaaactatttgtttaattcagtttgcagcttatctgcaacaactttacaaaatggctcatattaatctatgatgcataaaaa |
200 |
Q |
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| T |
30098 |
catgggtgcatatctgcttaaactccttgtttaattcagtttgcagcttgcctgcaacaactttacaaaatggcttatattaatctatgatgcataaaaa |
29999 |
T |
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| Q |
201 |
tgaatggtcctgtttgttaatgcagttcacttctgaaagcatcttgtgttaagccttaaccct--aaaacttgctggtagattttagaaggtaataagga |
298 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
29998 |
tgaatggtcctgttcgttaatgcagttcacttctgaaagcatcttgtgttaaaccttatccctaaaaaacttgctggtagattttagaaggtaataagga |
29899 |
T |
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| Q |
299 |
ttttcagagtaattggattaatgggaggggtgtcaaaatcaatttccacaatataaaaaattgtgaatgaatgttat |
375 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29898 |
ttttcagaataattggattaatgggaggggtgtcaaaattaatttccacaatataaaaaattgtgaatgaatgttat |
29822 |
T |
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