View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16957_low_1 (Length: 605)

Name: NF16957_low_1
Description: NF16957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16957_low_1
NF16957_low_1
[»] chr7 (3 HSPs)
chr7 (77-595)||(6663193-6663723)
chr7 (106-194)||(46674109-46674195)
chr7 (220-252)||(46674791-46674823)
[»] chr4 (5 HSPs)
chr4 (81-194)||(5688033-5688144)
chr4 (370-447)||(49315357-49315434)
chr4 (216-252)||(5687401-5687437)
chr4 (544-580)||(49315224-49315260)
chr4 (138-237)||(49315558-49315657)
[»] chr8 (2 HSPs)
chr8 (106-194)||(31624532-31624618)
chr8 (216-252)||(31625237-31625273)
[»] chr1 (1 HSPs)
chr1 (133-178)||(38716101-38716146)


Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 77 - 595
Target Start/End: Complemental strand, 6663723 - 6663193
Alignment:
Q  77 attaattattcatggtttttggatcgttattggattttgaaaatttgaagaatttgattgaaatggggaaagaagttgaggatgttgaagaaggtgagat 176  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6663723 attaattattcatggtttttggatcgttattggattttgaaatttcgaagaatttgattgaaatggggaaagaagttgaggatgttgaagaaggtgagat 6663624  T
Q  177 ttctgattctgcttcattggaagagattaccgaagaagatttcaaaaagggtgatgatgttaaggtgaataatagtgatgtaaaggcggataaaagtgat 276  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  6663623 ttctgattctgcttcattggaagagattactgaagaagatttcaaaaagggtgatgatgttaaggtgaataacagtgatgtaaagacggataaaagtgat 6663524  T
Q  277 aataaggttaaaactggtggtgg---------------tgattctagggtgtgggctgttcaggatttgtattcgaagtatccgactatatgtcgaggtt 361  Q
    |||||||||||||||||||||||               |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6663523 aataaggttaaaactggtggtggaggtggtggtggtggtgattctagggtttgggctgttcaggatttgtattcgaagtatccgactatatgtcgaggtt 6663424  T
Q  362 atgcgtcgggattgtataatcttgcttgggcacaagctgttcagaataagcctttgaatgatatttttgttatggaacttgataaaaatgctaatgctaa 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6663423 atgcgtcgggattgtataatcttgcttgggcacaagctgttcagaacaagcctttgaatgatatttttgttatggaacttgataaaaatgctaatgctaa 6663324  T
Q  462 tagtaacaatagtgggaacaaagatggtgagttgaataagtcgtcgaaggagattgttgtagtgnnnnnnnnnnnnnnnnnaaaagaggaaggggaattg 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||| |||    
T  6663323 tagtaacaatagtgggaacaaagatggtgagttgaataagtcgtcgaaggagattgttgtagtg---gatgatgatgatgaaaaagaggaaggggagttg 6663227  T
Q  562 gaggagggtgagattgatggtgatgctgatgatg 595  Q
    ||||||||||||||||||||||||||||||||||    
T  6663226 gaggagggtgagattgatggtgatgctgatgatg 6663193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 46674109 - 46674195
Alignment:
Q  106 ttggattttgaaaatttgaagaatttgattgaaatggggaaagaagttgaggatgttgaagaaggtgagatttctgattctgcttcatt 194  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46674109 ttggattttgaaaatc-gaagaatttgattgaaatggg-aaagaagttgaggatgttgaagaaggtgagatttctgattatgcttcatt 46674195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 46674791 - 46674823
Alignment:
Q  220 aaaaagggtgatgatgttaaggtgaataatagt 252  Q
    |||||||||||||||||||||||||||||||||    
T  46674791 aaaaagggtgatgatgttaaggtgaataatagt 46674823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 8e-41; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 5688144 - 5688033
Alignment:
Q  81 attattcatggtttttggatcgttattggattttgaaaatttgaagaatttgattgaaatggggaaagaagttgaggatgttgaagaaggtgagatttct 180  Q
    |||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5688144 attattcatggtttttggattgtttttggattttgaaaatt-gaagaatttgattgaaatggg-aaagaagttgaggatgttgaagaaggtgagatttct 5688047  T
Q  181 gattctgcttcatt 194  Q
    |||| |||||||||    
T  5688046 gattttgcttcatt 5688033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 370 - 447
Target Start/End: Complemental strand, 49315434 - 49315357
Alignment:
Q  370 ggattgtataatcttgcttgggcacaagctgttcagaataagcctttgaatgatatttttgttatggaacttgataaa 447  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  49315434 ggattgtataatcttgcttgggcacaggctgttcagaataagcctttgaatgatatttttgctatggaaattgataaa 49315357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 5687437 - 5687401
Alignment:
Q  216 tttcaaaaagggtgatgatgttaaggtgaataatagt 252  Q
    |||||||||||||||||||||||||||||||||||||    
T  5687437 tttcaaaaagggtgatgatgttaaggtgaataatagt 5687401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 544 - 580
Target Start/End: Complemental strand, 49315260 - 49315224
Alignment:
Q  544 aaagaggaaggggaattggaggagggtgagattgatg 580  Q
    |||||||||||||| ||||||||||||||||||||||    
T  49315260 aaagaggaaggggagttggaggagggtgagattgatg 49315224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 49315657 - 49315558
Alignment:
Q  138 aatggggaaagaagttgaggatgttgaagaaggtgagatttctgattctgcttcattggaagagattaccgaagaagatttcaaaaagggtgatgatgtt 237  Q
    ||||| |||||| ||||||||||| ||||| || |||||||||||| || ||||| || ||| ||||| |||| | ||| |||| |||| |||| |||||    
T  49315657 aatggtgaaagaggttgaggatgtggaagagggagagatttctgatacttcttcagtgaaagtgattatcgaaaaggatctcaataaggttgatcatgtt 49315558  T

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Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 31624532 - 31624618
Alignment:
Q  106 ttggattttgaaaatttgaagaatttgattgaaatggggaaagaagttgaggatgttgaagaaggtgagatttctgattctgcttcatt 194  Q
    |||||||||||||||   |||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  31624532 ttggattttgaaaatca-aagaatttgattgaaatggg-aaagaagttgaggatgatgaagaatgtgagatttctgattatgcttcatt 31624618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 31625237 - 31625273
Alignment:
Q  216 tttcaaaaagggtgatgatgttaaggtgaataatagt 252  Q
    |||||||||||||||||||||||||||||||||||||    
T  31625237 tttcaaaaagggtgatgatgttaaggtgaataatagt 31625273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 38716101 - 38716146
Alignment:
Q  133 attgaaatggggaaagaagttgaggatgttgaagaaggtgagattt 178  Q
    ||||||||||||||||| | ||||||||| ||||| ||||||||||    
T  38716101 attgaaatggggaaagagggtgaggatgtggaagatggtgagattt 38716146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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