View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16957_low_2 (Length: 500)
Name: NF16957_low_2
Description: NF16957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16957_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 39128566 - 39129065
Alignment:
| Q |
1 |
tatgctttgtgtcaacacaatagtatcactgtgtttatgtttcattttgtttgaaatttccttaacaaggtttcatttttgtgtggtccgagtgaatgcc |
100 |
Q |
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| T |
39128566 |
tatgctttgtgtcaacacaatagtatcactgtgtttatgtttgattttgtttgaaatttccttaacaaggtttcatttttgtgtggtctgagtgaatgcc |
39128665 |
T |
|
| Q |
101 |
atagttgagaaattgattttaagggttttgcttgtttcaactatgttcaatttgaaaccaccaaataaacttatcaacattgttact----actaggtgt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
39128666 |
atagttgagaaattgattttaagggttttgcttgtttcaactatgttcaatttgaaaccaccaaataaacttatcaacattgttacttactaccaggtgt |
39128765 |
T |
|
| Q |
197 |
ttatgtttattcttattttcttttatctgttggcaatgtatatatgttgttagagcggtggattctgttttcacttaactttgtttttcctgattagatt |
296 |
Q |
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| T |
39128766 |
ttatgtttattcttattttcttttatctgttggcaatgtatatatgttgttagagcggtggattctgttttcacttacctttgtttttcctgattagatt |
39128865 |
T |
|
| Q |
297 |
tttaaatgtctattttcttggtgtttattgtttgtgtttgcttttggaagtgtattgtagaagtttcttgaaggaagcttatttattgnnnnnnnnnnnn |
396 |
Q |
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| T |
39128866 |
tttaaatgtctattttcttggtgtttatcgtttgtgtttgcttttggaagtgtattgtagaagtttcttgaaggaagcttatttattgttttttggtttt |
39128965 |
T |
|
| Q |
397 |
nnnncacaggcttttctttggtgtgaaggctactgttgaaaaatgatttttaagggttctgataagtcaaagtactgtgctgttggtgatggtgatgatg |
496 |
Q |
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| T |
39128966 |
ttttcacaggcttttctttggtgtgaaggctactgttgaaaaatgatttttaagggttctgataagtcaaagtactgtgctgttggtggtggtgatgatg |
39129065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 39496094 - 39496028
Alignment:
| Q |
423 |
aggctactgttgaaaaatgatttttaagggttctgataagtcaaagtactgtgctgttggtgatggt |
489 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||| |
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| T |
39496094 |
aggctaccgttgaaaaatggcttttaagggttctgataagtcaaagttctgtggtgttggtggtggt |
39496028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39128446 - 39128493
Alignment:
| Q |
1 |
tatgctttgtgtcaacacaatagtatcactgtgtttatgtttcatttt |
48 |
Q |
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|||||| |||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
39128446 |
tatgctctgtgtcaatacaatagtatcactttgtttatgtttgatttt |
39128493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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