View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16957_low_3 (Length: 278)
Name: NF16957_low_3
Description: NF16957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16957_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 47423797 - 47423585
Alignment:
| Q |
17 |
cacagacgaacgaaagcaaatgaacattgacgatgtgatgacaaaaacagctagtgacaaccacagtcatggattcatcactggtgaagtcatttgcgct |
116 |
Q |
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| T |
47423797 |
cacagacgaacgaaagcaaatgaacattgacgatgtgatgacaaaaacagctagtgacaaccacagtcatggattcatcactggtgaagtcatttgcgct |
47423698 |
T |
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| Q |
117 |
ttgctttggggaaggtcgtggaagtcgaagacggcggacgagaatcgttgatcatgattcatcaccggtgaagtggattggccgtggaagttgaagaaat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
47423697 |
ttgctttggggaaggtcgtggaagtcgaagacggcggacgagaatcgttgatcatgattcatcaccggtgaagtggagtggccgtgaaagttgaagaaat |
47423598 |
T |
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| Q |
217 |
agtactagattgt |
229 |
Q |
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| T |
47423597 |
agtactagattgt |
47423585 |
T |
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