View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16957_low_4 (Length: 254)

Name: NF16957_low_4
Description: NF16957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16957_low_4
NF16957_low_4
[»] chr8 (2 HSPs)
chr8 (8-104)||(26588111-26588207)
chr8 (14-105)||(1165460-1165550)
[»] chr1 (3 HSPs)
chr1 (8-104)||(18547880-18547976)
chr1 (10-104)||(2981105-2981199)
chr1 (8-105)||(12252521-12252618)
[»] chr2 (7 HSPs)
chr2 (8-102)||(1979988-1980082)
chr2 (8-104)||(4789218-4789314)
chr2 (8-104)||(10733859-10733956)
chr2 (10-104)||(16107347-16107441)
chr2 (8-104)||(16549925-16550021)
chr2 (30-100)||(106483-106552)
chr2 (8-104)||(42436452-42436548)
[»] chr5 (2 HSPs)
chr5 (8-104)||(14460134-14460230)
chr5 (30-105)||(23035138-23035212)
[»] chr3 (4 HSPs)
chr3 (8-99)||(8354137-8354228)
chr3 (4-105)||(5701026-5701127)
chr3 (12-89)||(22349251-22349328)
chr3 (8-60)||(290713-290765)
[»] chr6 (5 HSPs)
chr6 (8-106)||(7732647-7732745)
chr6 (8-87)||(32934080-32934158)
chr6 (107-162)||(32935982-32936037)
chr6 (10-69)||(24585710-24585769)
chr6 (34-105)||(2149707-2149778)
[»] chr7 (2 HSPs)
chr7 (8-103)||(6015789-6015884)
chr7 (39-100)||(13316540-13316601)
[»] chr4 (5 HSPs)
chr4 (8-54)||(38159650-38159696)
chr4 (48-97)||(38159305-38159354)
chr4 (20-75)||(4442111-4442166)
chr4 (14-92)||(10285460-10285536)
chr4 (46-92)||(10266435-10266481)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 26588207 - 26588111
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctg 104  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26588207 tcatcattttaatggttatgattttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctg 26588111  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 1165460 - 1165550
Alignment:
Q  14 ttttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctgg 105  Q
    |||||||||||||||||||||||| |||||| ||||| ||||| |||   || ||||||||| |||||||||||||||||||| ||||||||    
T  1165460 ttttaatggttatggttttatataattttgtataaat-tttataatacctgagcttgaccccactttctgaaatttctggatctgtccctgg 1165550  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 18547976 - 18547880
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  18547976 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccactttatgaaatttctggatccgtccctg 18547880  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 2981105 - 2981199
Alignment:
Q  10 atcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctg 104  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  2981105 atcattttaatggttatggttttatatatttttgtataaatatttatgacaaacgatcttgaccccactttctgaaatttctggatccgtccctg 2981199  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 12252521 - 12252618
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctgg 105  Q
    ||||| ||||| |||||||   ||||||||||||||| |||||||||||||||||| || |||||||| |||  |||||||||||||||||| |||||    
T  12252521 tcatcgttttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaatttctggatccgttcctgg 12252618  T

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Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 1979988 - 1980082
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccc 102  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1979988 tcatcattttaatggttatgattttatatatttttgtttaaatatttatgataaacgatcttgaccccactttctgaaatttctggatccgtccc 1980082  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 4789314 - 4789218
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||    
T  4789314 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccactttatgaaatttttggatccgtccctg 4789218  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 10733859 - 10733956
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatat-ttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  10733859 tcatcattttaatggttatggttttatatatttttgtttaaatatataatgataaacgatcttgaccccactttctaaaatttctggatccgtccctg 10733956  T

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Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 16107441 - 16107347
Alignment:
Q  10 atcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctg 104  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||  |||||||||||| |||||||||||||||    
T  16107441 atcattttaatggttatggttttatatatttttgtataaatatttatgacaaacgatcttgaccctactttctgaaattcctggatccgtccctg 16107347  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 16550021 - 16549925
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctg 104  Q
    ||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |||  |||||||  ||||||||||||| || |||||||||||    
T  16550021 tcatcattttaatggatgtggttttatatatttttgtataaatatttatgataagcgagtttgacccgactttctgaaatttttgaatccgtccctg 16549925  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 106483 - 106552
Alignment:
Q  30 tttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtc 100  Q
    |||||||||||| || |||||||||| ||||||| || |||||| | |||  |||||||||||||||||||    
T  106483 tttatatatttt-gtataaatatttaagataaacaatattgaccacacttattgaaatttctggatccgtc 106552  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 42436452 - 42436548
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctg 104  Q
    ||||||||||| | |||||   |||| |||||||| |  ||||||||||||||||  |  |||||| | |||  |||||||||||||||||||||||    
T  42436452 tcatcattttatttgttataaatttacatatttttctagaaatatttatgataaataactttgacctcacttattgaaatttctggatccgtccctg 42436548  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 14460230 - 14460134
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||||||    
T  14460230 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgagcgtgaccccactttctgaaattcctggatccgtccctg 14460134  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 23035212 - 23035138
Alignment:
Q  30 tttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctgg 105  Q
    ||||||||||||| |||| ||||  |||||||||||| |||||||| | |  | ||||||||||||||||||||||    
T  23035212 tttatatatttttatttacatata-atgataaacgatattgaccccacatattaaaatttctggatccgtccctgg 23035138  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 8354228 - 8354137
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  8354228 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgacctcgctttttgaaatttttggatccgt 8354137  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 5701026 - 5701127
Alignment:
Q  4 gacatcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccct 103  Q
    ||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||    
T  5701026 gacattatcattttaatggttatggttttagatatctttgtataaatatttatgacaaacgatcttgaccctactttctgaaatttctggatccatccct 5701125  T
Q  104 gg 105  Q
    ||    
T  5701126 gg 5701127  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 22349328 - 22349251
Alignment:
Q  12 cattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaattt 89  Q
    |||| ||||||| ||| |||||||||||||||| ||||||||||| | |||||| ||||||| | |||||| ||||||    
T  22349328 cattataatggtcatgattttatatatttttgtataaatatttataaaaaacgagcttgacctctctttctcaaattt 22349251  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 290765 - 290713
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgata 60  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||| ||||||    
T  290765 tcatcattttattggttataaatttatatatttttgtataaatattcatgata 290713  T

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Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 7732745 - 7732647
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctgga 106  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  ||||||||||||||||    
T  7732745 tcatcattttaatggttatgattttatatatttttgtttaaatatttatgataaacgatcttgaccccactttctgtaattcttggatccgtccctgga 7732647  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 32934158 - 32934080
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaat 87  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  32934158 tcatcattttaatggctatggttt-atatatttttgtttaaatatttatgataaacgatcttgaccccattttctgaaat 32934080  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 32936037 - 32935982
Alignment:
Q  107 gttgtgggttgtttcggtagtgtggtgacgatgtgatgatggtggtgataatgagg 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32936037 gttgtgggttgtttcggtagtgtggtgacgatgtgatgatggtggtgataatgagg 32935982  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 24585769 - 24585710
Alignment:
Q  10 atcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatctt 69  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  24585769 atcattttaatggttatggttttatatatttttgtataaatatttatgacaaacgatctt 24585710  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 2149778 - 2149707
Alignment:
Q  34 tatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccctgg 105  Q
    ||||||||| | |||||||||||||||||||||||||||||||| |  ||||| |||| |||||||| ||||    
T  2149778 tatatttttttataaatatttatgataaacgatcttgaccccgcgtattgaaacttctagatccgtctctgg 2149707  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 6015789 - 6015884
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtccct 103  Q
    ||||| ||||| |||||||   ||||||||||||||| |||||||||||||||||| || |||||||| |||  |||||||||||||||| |||||    
T  6015789 tcatcgttttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaatttctggatccatccct 6015884  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 13316540 - 13316601
Alignment:
Q  39 ttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctggatccgtc 100  Q
    |||||| |||||||||| ||||||| || |||||||| |||  |||||||||||||||||||    
T  13316540 ttttgtataaatatttaagataaacaatattgaccccacttattgaaatttctggatccgtc 13316601  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 38159696 - 38159650
Alignment:
Q  8 tcatcattttaatggttatggttttatatatttttgtttaaatattt 54  Q
    |||||||||||||| |||| ||||||||||||||||| |||||||||    
T  38159696 tcatcattttaatgtttatcgttttatatatttttgtataaatattt 38159650  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 38159354 - 38159305
Alignment:
Q  48 aatatttatgataaacgatcttgaccccgctttctgaaatttctggatcc 97  Q
    |||||||||||||||||| ||||||| | ||||||||||||| |||||||    
T  38159354 aatatttatgataaacgagcttgacctcactttctgaaatttttggatcc 38159305  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 4442166 - 4442111
Alignment:
Q  20 tggttatggttttatatatttttgtttaaatatttatgataaacgatcttgacccc 75  Q
    ||||||| | ||||||| |||||||||||||||||||||||||  || ||||||||    
T  4442166 tggttatagatttatatttttttgtttaaatatttatgataaaaaatattgacccc 4442111  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 10285536 - 10285460
Alignment:
Q  14 ttttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccgctttctgaaatttctg 92  Q
    ||||| ||||||||  |||| |||||||| |  ||||||||||||||||||||||||| ||| |||  |||||||||||    
T  10285536 ttttattggttatgaatttaaatatttttat--aaatatttatgataaacgatcttgatcccacttattgaaatttctg 10285460  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 10266481 - 10266435
Alignment:
Q  46 taaatatttatgataaacgatcttgaccccgctttctgaaatttctg 92  Q
    |||||||||||||||||||||||||| ||| |||  |||||||||||    
T  10266481 taaatatttatgataaacgatcttgatcccacttattgaaatttctg 10266435  T

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