View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16958_high_1 (Length: 426)
Name: NF16958_high_1
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 413
Target Start/End: Complemental strand, 8151612 - 8151209
Alignment:
| Q |
10 |
ataattcttgatggcttgcttttccaatttaataaatacatcataataattgttcttcaacggaaagtatcgttttgagtaaaatgttattgcttttaaa |
109 |
Q |
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| T |
8151612 |
ataattcttgatggcttgcttttccaatttaataaatacatcatgataattgttcttcaacggaaagtatcgttttgagtaaaatgttattgcttttaaa |
8151513 |
T |
|
| Q |
110 |
attggcacaacaatatttgatgccttgtcttttcttggttggcactaatatcacactgtctcattcgtgtatatattgttctttctttaccacatttaat |
209 |
Q |
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| T |
8151512 |
attggcacaacaatatttgatgccttgtcttttcttggttggcactaatatcacactgtctcattcgtgtatatattgttctttctttaccacatttaat |
8151413 |
T |
|
| Q |
210 |
tgttgtagtctagttaaagtggatatattacattgacaaaaactctcccaatcgtaagaaaaactataaacttgctacggtagatcggtccaacatattt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8151412 |
tgttgtagtctagttaaagtggatatattacattgacaaaaactctcccaatcgtaagaaaaactataaacttgctacggtagatcggtccaacatattt |
8151313 |
T |
|
| Q |
310 |
ggaagcttaaagcaaattctataatgtgataacacaaggtttataaagataaaatcttgttttgttgagttcaagatttaaacttacgtcaaaaatgata |
409 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
8151312 |
ggaagcttaaagcaaattctataatgagataacacaaggtttataaagataaaatcttgttttgtttagttcaagatttaaacttacgtcaaaaataata |
8151213 |
T |
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| Q |
410 |
taag |
413 |
Q |
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|||| |
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| T |
8151212 |
taag |
8151209 |
T |
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