View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16958_high_14 (Length: 322)
Name: NF16958_high_14
Description: NF16958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16958_high_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 6863290 - 6863606
Alignment:
| Q |
6 |
tgtcgaagaatattgaatactgttgctgctatgtgagatgatgtgagaccagctacagtcaattgctcagcaggtgaaccatggtcaatataaatgtcag |
105 |
Q |
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| T |
6863290 |
tgtccaagaatgttgaatactgttgctgctatgtgagatgatgtgagaccagctacagccaattgctcagcaggtgaaccatggtcaatataaatgtcag |
6863389 |
T |
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| Q |
106 |
gaaaaaccattggcctccactggataatatgaaacacatttcagctttcagcaactagttaaatgttcacacaaacttcagagatgcatgttatatgtta |
205 |
Q |
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| T |
6863390 |
gaaagaccattggcctccactggataatatgaaacacatttcagctttcagcaactagttaaatattcacacaaacttcagagatgcatgttatatgtta |
6863489 |
T |
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| Q |
206 |
tatattactatgatgaatttaattcattcgtccagccaccactgtcaatgaatcatattattaacaacgtttaactttgatcataaatatttctaaagtc |
305 |
Q |
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| T |
6863490 |
tatattactatgatgaatttaattcattcgtccagccaccactgtcaatgaatcatattattaacaacgtttaactttgatcataaatatttctaaagtc |
6863589 |
T |
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| Q |
306 |
acacaaatgactcgtta |
322 |
Q |
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| T |
6863590 |
acacaaatgactcgtta |
6863606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 49148970 - 49148861
Alignment:
| Q |
18 |
ttgaatactgttgctgctatgtgagatgatgtgagaccagctacagtcaattgctcagcaggtgaaccatggtcaatataaatgtcaggaaaaaccattg |
117 |
Q |
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| T |
49148970 |
ttgaacactgttgctgctatgtgagagggtgtaagaccagccatacacaattggtcagcaggtgatccatggtcaatatatcggtcaggaagaaccaccg |
49148871 |
T |
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| Q |
118 |
gcctccactg |
127 |
Q |
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| T |
49148870 |
gcctccactg |
49148861 |
T |
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